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SCNpilot_expt_500_p_scaffold_83

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Displaying items 1-30 of 156 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_83_1
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..1214
DNA (1212bp) protein (404aa)
DNA-directed DNA polymerase (EC:2.7.7.7); K03502 DNA polymerase V
Uncharacterized protein {ECO:0000313|EMBL:AIL13128.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
Protein umuC id=4501167 bin=GWF2_Ignavibacteria_33_9 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Ignavibacteria_33_9 organism_group=Ignavibacteria
SCNpilot_expt_500_p_scaffold_83_2
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1512..1718)
DNA (207bp) protein (69aa)
Uncharacterized protein {ECO:0000313|EMBL:AIL13126.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
SCNpilot_expt_500_p_scaffold_83_3
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1851..2816)
DNA (966bp) protein (322aa)
Uncharacterized protein n=1 Tax=Nocardia asteroides NBRC 15531 RepID=U5EN54_NOCAS
Uncharacterized protein {ECO:0000313|EMBL:AIL13125.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_83_4
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3010..3900)
DNA (891bp) protein (297aa)
Uncharacterized protein {ECO:0000313|EMBL:AIL13124.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
Redox-sensitive transcriptional activator id=3924194 bin=GWC2_Alphaproteobacteria_42_16 species=Caenispirillum salinarum genus=Caenispirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
regulatory helix-turn-helix protein, lysR family,ligand-binding protein, LysR family
SCNpilot_expt_500_p_scaffold_83_5
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3893..4810)
DNA (918bp) protein (306aa)
Putative uncharacterized protein n=1 Tax=Burkholderia sp. (strain CCGE1003) RepID=E1T839_BURSG
Uncharacterized protein {ECO:0000313|EMBL:AIL13123.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
hypothetical protein; K15268 O-acetylserine/cysteine efflux transporter
SCNpilot_expt_500_p_scaffold_83_6
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4810..5997)
DNA (1188bp) protein (396aa)
Acetyl-CoA acetyltransferase {ECO:0000313|EMBL:AIL13122.1}; EC=2.3.1.9 {ECO:0000313|EMBL:AIL13122.1};; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
atoB; acetyl-CoA C-acetyltransferase (EC:2.3.1.9); K00626 acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
Acetyl-CoA C-acetyltransferase n=1 Tax=Burkholderia multivorans (strain ATCC 17616 / 249) RepID=A9ATG8_BURM1
SCNpilot_expt_500_p_scaffold_83_7
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6039..7427)
DNA (1389bp) protein (463aa)
divalent cation transporter (EC:3.6.1.-); K06213 magnesium transporter
Magnesium transporter MgtE {ECO:0000256|RuleBase:RU362011}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
Putative magnesium transporter, MgtE-like id=3710854 bin=GWC2_Alphaproteobacteria_42_16 species=Azospirillum brasilense genus=Azospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good + rbh
SCNpilot_expt_500_p_scaffold_83_8
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7430..9730)
DNA (2301bp) protein (767aa)
Malic enzyme {ECO:0000313|EMBL:AIL13120.1}; EC=1.1.1.40 {ECO:0000313|EMBL:AIL13120.1};; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
dme; malic enzyme (EC:1.1.1.39); K00029 malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40] rbh
NAD-dependent malic enzyme n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6IQV9_RHOCS rbh
SCNpilot_expt_500_p_scaffold_83_9
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9748..10107)
DNA (360bp) protein (120aa)
Uncharacterized protein {ECO:0000313|EMBL:AIL13119.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
SCNpilot_expt_500_p_scaffold_83_10
Hordeum vulgare, Hordeum, Poales, commelinids, Streptophyta, Viridiplantae

Not on your lists

10774..12093
DNA (1320bp) protein (440aa)
Predicted protein n=1 Tax=Hordeum vulgare var. distichum RepID=F2E0F7_HORVD
Predicted protein {ECO:0000313|EMBL:BAK00829.1}; TaxID=112509 species="Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum.;" source="Hordeum vulgare var. distichum (Domesticated barley).;"
SCNpilot_expt_500_p_scaffold_83_11
GWF2_Lentisphaerae_57_35_curated, Lentisphaerae, Bacteria

Not on your lists

comp(12419..12844)
DNA (426bp) protein (142aa)
Sulfurtransferase id=2963731 bin=GWF2_Lentisphaerae_57_35 species=ACD39 genus=ACD39 taxon_order=ACD39 taxon_class=ACD39 phylum=unknown tax=GWF2_Lentisphaerae_57_35 organism_group=Lentisphaerae organism_desc=a459
rhodanese domain-containing protein
Tax=GWF2_Lentisphaerae_57_35_curated
SCNpilot_expt_500_p_scaffold_83_12
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12911..14680)
DNA (1770bp) protein (590aa)
Chaperone protein HscA homolog n=1 Tax=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) RepID=Q2W2U7_MAGSA
Uncharacterized protein {ECO:0000313|EMBL:AIL13117.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
hscA; chaperone protein HscA; K04044 molecular chaperone HscA
SCNpilot_expt_500_p_scaffold_83_13
Idiomarina salinarum, Idiomarina, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14688..15170)
DNA (483bp) protein (161aa)
hypothetical protein n=1 Tax=Leeia oryzae RepID=UPI0003787852
Co-chaperone protein HscB homolog {ECO:0000256|HAMAP-Rule:MF_00682}; TaxID=435908 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Idiomarinaceae; Idiomarina.;" source="Idiomarina salinarum.;"
hscB; co-chaperone HscB; K04082 molecular chaperone HscB
SCNpilot_expt_500_p_scaffold_83_14
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15184..15528)
DNA (345bp) protein (115aa)
Uncharacterized protein n=1 Tax=Magnetospirillum sp. SO-1 RepID=M2Z3S2_9PROT
Uncharacterized protein {ECO:0000313|EMBL:AIL13116.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
hypothetical protein; K13628 iron-sulfur cluster assembly protein
SCNpilot_expt_500_p_scaffold_83_15
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15518..15913)
DNA (396bp) protein (132aa)
NifU family protein n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9IR06_BORPD
Scaffolding protein {ECO:0000313|EMBL:AIL13115.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
nifU; scaffold protein; K04488 nitrogen fixation protein NifU and related proteins
SCNpilot_expt_500_p_scaffold_83_16
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15924..17126)
DNA (1203bp) protein (401aa)
Cysteine desulfurase IscS {ECO:0000256|HAMAP-Rule:MF_00331, ECO:0000256|SAAS:SAAS00038344}; EC=2.8.1.7 {ECO:0000256|HAMAP-Rule:MF_00331, ECO:0000256|SAAS:SAAS00063383};; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
cysteine sulfinate desulfinase/cysteine desulfurase; K04487 cysteine desulfurase [EC:2.8.1.7]
cysteine desulfurase id=2997696 bin=GWA1_Alphaproteobacteria_45_9 species=Candidatus Odyssella thessalonicensis genus=Candidatus Odyssella taxon_order=Rickettsiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA1_Alphaproteobacteria_45_9 organism_group=Alphaproteobacteria organism_desc=Good marker genes; small
SCNpilot_expt_500_p_scaffold_83_17
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17143..18324)
DNA (1182bp) protein (394aa)
cysteine sulfinate desulfinase/cysteine desulfurase; K04487 cysteine desulfurase [EC:2.8.1.7] rbh
hypothetical protein n=1 Tax=Kiloniella laminariae RepID=UPI00036FA4F0 rbh
Uncharacterized protein {ECO:0000313|EMBL:AIL13113.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
SCNpilot_expt_500_p_scaffold_83_18
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18321..18770)
DNA (450bp) protein (150aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2EWA2_9BACT
Uncharacterized protein {ECO:0000313|EMBL:AIL13112.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
transcriptional regulator; K13643 Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
SCNpilot_expt_500_p_scaffold_83_19
Thalassospira permensis, Thalassospira, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18938..22651
DNA (3714bp) protein (1238aa)
prtB; serine protease homologue-secreted serine protease (EC:3.4.24.-); K01417 [EC:3.4.24.-]
autotransporter n=1 Tax=Candidatus Odyssella thessalonicensis RepID=UPI000225AC7E
Uncharacterized protein {ECO:0000313|EMBL:KEO52528.1}; TaxID=1353532 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Thalassospira.;" source="Thalassospira permensis NBRC 106175.;"
SCNpilot_expt_500_p_scaffold_83_20
unknown

Not on your lists

22683..22907
DNA (225bp) protein (75aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_83_21
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23129..23785
DNA (657bp) protein (219aa)
Hydrolase of the alpha/beta superfamily n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TWZ1_TISMK rbh
Alpha/beta hydrolase {ECO:0000313|EMBL:AIL13109.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
alpha/beta superfamily hydrolase rbh
SCNpilot_expt_500_p_scaffold_83_22
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23844..25349)
DNA (1506bp) protein (502aa)
Serine endoprotease n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AKF7_AZOBR rbh
Uncharacterized protein {ECO:0000313|EMBL:AIL13108.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
degP2; serine endoprotease rbh
SCNpilot_expt_500_p_scaffold_83_23
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25402..26277)
DNA (876bp) protein (292aa)
hflC; HflC protein; K04087 membrane protease subunit HflC [EC:3.4.-.-]
Protein HflC n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6INV6_RHOCS
Protein HflC {ECO:0000256|PIRNR:PIRNR005651}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
SCNpilot_expt_500_p_scaffold_83_24
Rhodospirillum centenum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26274..27380)
DNA (1107bp) protein (369aa)
hflK; HflK protein; K04088 membrane protease subunit HflK [EC:3.4.-.-]
membrane protein n=1 Tax=Pelagibacter ubique RepID=UPI0003B39F8B
HflK protein, putative {ECO:0000313|EMBL:ACI99377.1}; TaxID=414684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum centenum (strain ATCC 51521 / SW).;"
SCNpilot_expt_500_p_scaffold_83_25
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27523..27990)
DNA (468bp) protein (156aa)
Thiol peroxidase2C Bcp-type n=1 Tax=gamma proteobacterium IMCC2047 RepID=F3KFB9_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:AIL13106.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
bcp; thiol peroxidase, thioredoxin-dependent
SCNpilot_expt_500_p_scaffold_83_26
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28047..31196
DNA (3150bp) protein (1050aa)
Putative uncharacterized protein n=1 Tax=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) RepID=Q2W3T9_MAGSA rbh
Uncharacterized protein {ECO:0000313|EMBL:AIL13105.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
hypothetical protein rbh
SCNpilot_expt_500_p_scaffold_83_27
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31200..31844
DNA (645bp) protein (215aa)
Ribonuclease HII {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016879}; Short=RNase HII {ECO:0000256|HAMAP-Rule:MF_00052};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016872};; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
rnhB; ribonuclease HII; K03470 ribonuclease HII [EC:3.1.26.4]
Ribonuclease HII n=2 Tax=Magnetospirillum RepID=M2ZUZ5_9PROT
SCNpilot_expt_500_p_scaffold_83_28
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(31891..33027)
DNA (1137bp) protein (379aa)
Patatin n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XPQ4_9BACT rbh
Patatin {ECO:0000313|EMBL:EEF58177.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Patatin rbh
SCNpilot_expt_500_p_scaffold_83_29
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33102..33929)
DNA (828bp) protein (276aa)
metallophosphoesterase n=1 Tax=Candidatus Odyssella thessalonicensis RepID=UPI000225A8EF
Metallophosphoesterase {ECO:0000313|EMBL:AIL13103.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
hypothetical protein; K09769 hypothetical protein
SCNpilot_expt_500_p_scaffold_83_30
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33926..34516)
DNA (591bp) protein (197aa)
5-formyltetrahydrofolate cyclo-ligase {ECO:0000256|RuleBase:RU361279}; EC=6.3.3.2 {ECO:0000256|RuleBase:RU361279};; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
5-formyltetrahydrofolate cyclo-ligase; K01934 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]
hypothetical protein n=1 Tax=Kiloniella laminariae RepID=UPI00036AF7DA
Displaying items 1-30 of 156 in total

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