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SCNpilot_expt_500_p_scaffold_675

Search features with annotation key words

Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_675_1
unknown

Not on your lists

comp(653..2203)
DNA (1551bp) protein (517aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_675_2
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2324..3538)
DNA (1215bp) protein (405aa)
Uncharacterized protein {ECO:0000313|EMBL:AIL12520.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
SCNpilot_expt_500_p_scaffold_675_3
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3650..5137)
DNA (1488bp) protein (496aa)
Uncharacterized protein {ECO:0000313|EMBL:AIL12521.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
SCNpilot_expt_500_p_scaffold_675_4
Acanthamoeba castellanii, Acanthamoeba, Longamoebia, Eukaryota

Not on your lists

5345..7063
DNA (1719bp) protein (573aa)
Lipase n=1 Tax=Acanthamoeba castellanii str. Neff RepID=L8HJM3_ACACA
lipase
Lipase {ECO:0000313|EMBL:ELR24888.1}; TaxID=1257118 species="Eukaryota; Amoebozoa; Discosea; Longamoebia; Centramoebida; Acanthamoebidae; Acanthamoeba.;" source="Acanthamoeba castellanii str. Neff.;"
SCNpilot_expt_500_p_scaffold_675_5
Thalassospira sp. HJ, Thalassospira, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7195..8214
DNA (1020bp) protein (340aa)
glycine cleavage system protein T n=1 Tax=Fodinicurvata sediminis RepID=UPI0003B55EA2
Aminomethyltransferase {ECO:0000313|EMBL:KJE36021.1}; TaxID=1616823 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Thalassospira.;" source="Thalassospira sp. HJ.;"
glycine cleavage T protein (aminomethyl transferase); K06980
SCNpilot_expt_500_p_scaffold_675_6
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8211..9317)
DNA (1107bp) protein (369aa)
Putrescine-binding periplasmic protein n=1 Tax=Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415) RepID=D8JXA1_HYPDA
Putrescine-binding periplasmic protein {ECO:0000256|PIRNR:PIRNR019574}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
family 1 extracellular solute-binding protein; K11073 putrescine transport system substrate-binding protein
SCNpilot_expt_500_p_scaffold_675_7
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9701..10471
DNA (771bp) protein (257aa)
V8-like Glu-specific endopeptidase n=1 Tax=Microcoleus sp. PCC 7113 RepID=K9W924_9CYAN
V8-like Glu-specific endopeptidase
Uncharacterized protein {ECO:0000313|EMBL:AHE51898.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
SCNpilot_expt_500_p_scaffold_675_8
unknown

Not on your lists

10468..10743
DNA (276bp) protein (92aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_675_9
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10784..11818)
DNA (1035bp) protein (345aa)
Uncharacterized protein {ECO:0000313|EMBL:AIL12523.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
hypothetical protein COdytL_05687 id=2475696 bin=GWA1_Alphaproteobacteria_45_9 species=Candidatus Odyssella thessalonicensis genus=Candidatus Odyssella taxon_order=Rickettsiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA1_Alphaproteobacteria_45_9 organism_group=Alphaproteobacteria organism_desc=Good marker genes; small
hypothetical protein; K11895 type VI secretion system protein ImpH
SCNpilot_expt_500_p_scaffold_675_10
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11773..13602)
DNA (1830bp) protein (610aa)
hypothetical protein n=1 Tax=Candidatus Odyssella thessalonicensis RepID=UPI000225C0B3 rbh
Uncharacterized protein {ECO:0000313|EMBL:AIL12524.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
hypothetical protein; K11896 type VI secretion system protein ImpG
SCNpilot_expt_500_p_scaffold_675_11
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13695..14432)
DNA (738bp) protein (246aa)
tRNA pseudouridine synthase A {ECO:0000256|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000256|HAMAP-Rule:MF_00171};; tRNA pseudouridine(38-40) synthase {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA pseudouridylate synthase I {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA-uridine isomerase I {ECO:0000256|HAMAP-Rule:MF_00171}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
hypothetical protein n=1 Tax=Novispirillum itersonii RepID=UPI00036309C0 rbh
truA; tRNA pseudouridine synthase A rbh
SCNpilot_expt_500_p_scaffold_675_12
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14414..15367)
DNA (954bp) protein (318aa)
Methionyl-tRNA formyltransferase {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00043680}; EC=2.1.2.9 {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00150580};; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
methionyl-tRNA formyltransferase; K00604 methionyl-tRNA formyltransferase [EC:2.1.2.9] rbh
Methionyl-tRNA formyltransferase n=1 Tax=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) RepID=FMT_MAGSA rbh
SCNpilot_expt_500_p_scaffold_675_13
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15378..15881)
DNA (504bp) protein (168aa)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
Peptide deformylase n=1 Tax=Caenispirillum salinarum AK4 RepID=K9H5Q4_9PROT
N-formylmethionyl-tRNA deformylase
SCNpilot_expt_500_p_scaffold_675_14
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16240..17043
DNA (804bp) protein (268aa)
Signal peptidase I {ECO:0000256|RuleBase:RU362042}; EC=3.4.21.89 {ECO:0000256|RuleBase:RU362042};; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
peptidase S26A, signal peptidase I (EC:3.4.21.89); K03100 signal peptidase I [EC:3.4.21.89]
Signal peptidase I, Serine peptidase, MEROPS family S26A n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QL53_NITHX
SCNpilot_expt_500_p_scaffold_675_15
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17052..17726
DNA (675bp) protein (225aa)
Ribonuclease 3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231299}; EC=3.1.26.3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231445};; Ribonuclease III {ECO:0000256|HAMAP-Rule:MF_00104}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
ribonuclease III; K03685 ribonuclease III [EC:3.1.26.3]
Ribonuclease 3 id=3529484 bin=GWA1_Alphaproteobacteria_45_9 species=Phaeospirillum molischianum genus=Phaeospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA1_Alphaproteobacteria_45_9 organism_group=Alphaproteobacteria organism_desc=Good marker genes; small
SCNpilot_expt_500_p_scaffold_675_16
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17731..18621
DNA (891bp) protein (297aa)
GTPase Era n=1 Tax=Magnetospirillum sp. SO-1 RepID=M2ZVN4_9PROT
GTPase Era {ECO:0000256|HAMAP-Rule:MF_00367, ECO:0000256|SAAS:SAAS00085723}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
era; GTP-binding protein Era; K03595 GTP-binding protein Era
SCNpilot_expt_500_p_scaffold_675_17
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18672..19772)
DNA (1101bp) protein (367aa)
Cysteine protease n=1 Tax=Pseudomonas sp. GM79 RepID=J3IDK6_9PSED
Uncharacterized protein {ECO:0000313|EMBL:AIL12533.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
SCNpilot_expt_500_p_scaffold_675_18
unknown

Not on your lists

20459..20812
DNA (354bp) protein (118aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_675_19
unknown

Not on your lists

21035..21463
DNA (429bp) protein (143aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_675_20
unknown

Not on your lists

21472..22800
DNA (1329bp) protein (443aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_675_21
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22888..23523
DNA (636bp) protein (212aa)
Uncharacterized protein {ECO:0000313|EMBL:AIL12536.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
Transporter id=3710669 bin=GWC2_Alphaproteobacteria_42_16 species=Legionella pneumophila genus=Legionella taxon_order=Legionellales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
amino acid transporter LysE
SCNpilot_expt_500_p_scaffold_675_22
unknown

Not on your lists

comp(23540..24268)
DNA (729bp) protein (243aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_675_23
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24520..24738
DNA (219bp) protein (73aa)
translation initiation factor IF-1 n=1 Tax=Candidatus Odyssella thessalonicensis RepID=UPI000225A938
Translation initiation factor IF-1 {ECO:0000256|HAMAP-Rule:MF_00075}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
infA; translation initiation factor IF-1; K02518 translation initiation factor IF-1
SCNpilot_expt_500_p_scaffold_675_24
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24748..25329
DNA (582bp) protein (194aa)
Maf-like protein Plav_0527 n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HQG7_PARL1
maf protein; K06287 septum formation protein
Maf-like protein Plav_0527 {ECO:0000256|HAMAP-Rule:MF_00528}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_expt_500_p_scaffold_675_25
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25313..26248
DNA (936bp) protein (312aa)
ribonuclease, Rne/Rng family; K08301 ribonuclease G [EC:3.1.26.-]
ribonuclease E n=1 Tax=Patulibacter americanus RepID=UPI0003B6A384
Uncharacterized protein {ECO:0000313|EMBL:AIL12538.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
SCNpilot_expt_500_p_scaffold_675_26
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26248..26436
DNA (189bp) protein (63aa)
DNA gyrase inhibitor YacG n=2 Tax=Pseudovibrio RepID=G8PUG8_PSEUV
DNA gyrase inhibitor YacG {ECO:0000256|HAMAP-Rule:MF_00649, ECO:0000256|SAAS:SAAS00085446}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
zinc-binding protein; K09862 hypothetical protein
SCNpilot_expt_500_p_scaffold_675_27
unknown

Not on your lists

26460..26582
DNA (123bp) protein (41aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_675_28
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26554..27378
DNA (825bp) protein (275aa)
Enoyl-[acyl-carrier-protein] reductase [NADH] {ECO:0000256|PIRNR:PIRNR000094}; EC=1.3.1.9 {ECO:0000256|PIRNR:PIRNR000094};; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
enoyl-acyl-carrier-protein reductase (EC:1.3.1.9); K00208 enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9] rbh
Enoyl-[acyl-carrier-protein] reductase [NADH] n=1 Tax=Oceanibaculum indicum P24 RepID=K2JW47_9PROT
SCNpilot_expt_500_p_scaffold_675_29
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27390..29141
DNA (1752bp) protein (584aa)
Protease 4 {ECO:0000256|PIRNR:PIRNR001217}; EC=3.4.21.- {ECO:0000256|PIRNR:PIRNR001217};; Endopeptidase IV {ECO:0000256|PIRNR:PIRNR001217}; Protease IV {ECO:0000256|PIRNR:PIRNR001217}; Signal peptide peptidase {ECO:0000256|PIRNR:PIRNR001217}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
sppA1; signal peptide peptidase SppA; K04773 protease IV [EC:3.4.21.-] rbh
Signal peptide peptidase SppA, 67K type n=1 Tax=Cystobacter fuscus DSM 2262 RepID=S9PIB5_9DELT rbh
SCNpilot_expt_500_p_scaffold_675_30
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29151..30590
DNA (1440bp) protein (480aa)
Isocitrate/isopropylmalate dehydrogenase (EC:1.1.1.42); K00031 isocitrate dehydrogenase [EC:1.1.1.42]
Isocitrate/isopropylmalate dehydrogenase n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LHI5_CHLTF
Isocitrate dehydrogenase {ECO:0000313|EMBL:AIL12542.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
Displaying items 1-30 of 32 in total

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