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SCNpilot_expt_500_p_scaffold_1169

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Displaying items 1-30 of 46 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_1169_1
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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3..1163
DNA (1161bp) protein (387aa)
Succinyl-CoA ligase [ADP-forming] subunit beta {ECO:0000256|HAMAP-Rule:MF_00558}; EC=6.2.1.5 {ECO:0000256|HAMAP-Rule:MF_00558};; Succinyl-CoA synthetase subunit beta {ECO:0000256|HAMAP-Rule:MF_00558}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
succinyl-CoA synthetase (ADP-forming) beta subunit (EC:6.2.1.5)
Succinyl-CoA ligase [ADP-forming] subunit beta n=1 Tax=Rhodanobacter sp. 115 RepID=I4W9V4_9GAMM rbh
SCNpilot_expt_500_p_scaffold_1169_2
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1177..1719
DNA (543bp) protein (181aa)
Succinyl-CoA ligase [ADP-forming] subunit alpha {ECO:0000256|RuleBase:RU000699}; EC=6.2.1.5 {ECO:0000256|RuleBase:RU000699};; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
succinyl-CoA synthetase (ADP-forming) alpha subunit (EC:6.2.1.5)
succinyl-CoA synthetase subunit alpha n=1 Tax=Dyella ginsengisoli RepID=UPI0003451B61
SCNpilot_expt_500_p_scaffold_1169_3
Mastigocladus laminosus, Mastigocladus, Stigonematales, Cyanobacteria, Bacteria

Not on your lists

comp(1589..1846)
DNA (258bp) protein (86aa)
Uncharacterized protein {ECO:0000313|EMBL:KIY11965.1}; TaxID=1594576 species="Bacteria; Cyanobacteria; Stigonematales; Mastigocladus.;" source="Mastigocladus laminosus UU774.;"
Uncharacterized protein id=24650657 bin=uncultivated_archaeon_J07ABHX67 species=Bacillus anthracis genus=Bacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=uncultivated_archaeon_J07ABHX67
SCNpilot_expt_500_p_scaffold_1169_4
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1861..2766)
DNA (906bp) protein (302aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0003124787 rbh
Chromosome replication initiation inhibitor protein {ECO:0000313|EMBL:AIF47018.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
chromosome replication initiation inhibitor protein; K05596 LysR family transcriptional regulator, chromosome initiation inhibitor
SCNpilot_expt_500_p_scaffold_1169_5
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2869..3486
DNA (618bp) protein (206aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI000318BBEC
Amino acid transporter {ECO:0000313|EMBL:AHX14541.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
L-lysine exporter family protein; K06895 L-lysine exporter family protein LysE/ArgO
SCNpilot_expt_500_p_scaffold_1169_6
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3592..5283
DNA (1692bp) protein (564aa)
NAD synthetase {ECO:0000313|EMBL:EIL96533.1}; EC=6.3.5.1 {ECO:0000313|EMBL:EIL96533.1};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
NAD synthetase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WAP2_9GAMM rbh
NAD+ synthetase rbh
SCNpilot_expt_500_p_scaffold_1169_7
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5365..6231)
DNA (867bp) protein (289aa)
Outer membrane protein assembly factor BamD n=1 Tax=Rhodanobacter denitrificans RepID=I4WZI6_9GAMM rbh
Beta-barrel assembly machine subunit BamD
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_500_p_scaffold_1169_8
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6327..7301
DNA (975bp) protein (325aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
ribosomal large subunit pseudouridine synthase D (EC:5.4.99.-)
Pseudouridine synthase n=1 Tax=Rhodanobacter sp. 115 RepID=I4WAJ2_9GAMM rbh
SCNpilot_expt_500_p_scaffold_1169_9
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7431..8186
DNA (756bp) protein (252aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4WAJ3_9GAMM rbh
Laccase domain protein {ECO:0000256|RuleBase:RU361274}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
uncharacterized protein, YfiH family
SCNpilot_expt_500_p_scaffold_1169_10
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8300..8920
DNA (621bp) protein (207aa)
ATP-dependent chaperone ClpB n=1 Tax=Rhodanobacter denitrificans RepID=M4NJ91_9GAMM
Chaperone protein ClpB {ECO:0000256|RuleBase:RU362034}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
ATP-dependent chaperone ClpB
SCNpilot_expt_500_p_scaffold_1169_11
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8908..10767
DNA (1860bp) protein (620aa)
protein disaggregation chaperone n=1 Tax=Dyella japonica RepID=UPI0002F8E1F4
Chaperone protein ClpB {ECO:0000256|RuleBase:RU362034}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
ATP-dependent chaperone ClpB; K03695 ATP-dependent Clp protease ATP-binding subunit ClpB
SCNpilot_expt_500_p_scaffold_1169_12
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10850..13342)
DNA (2493bp) protein (831aa)
Outer membrane receptor for ferrienterochelin and colicins n=1 Tax=Rhodanobacter sp. 115 RepID=I4WAK2_9GAMM rbh
Outer membrane receptor for ferrienterochelin and colicins {ECO:0000313|EMBL:EIL96493.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
outer membrane receptor for ferrienterochelin and colicins; K02014 iron complex outermembrane recepter protein rbh
SCNpilot_expt_500_p_scaffold_1169_13
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13629..13922
DNA (294bp) protein (98aa)
FmdB family regulatory protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WGS9_9GAMM
FmdB family regulatory protein {ECO:0000313|EMBL:EIL98670.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
putative regulatory protein, FmdB family
SCNpilot_expt_500_p_scaffold_1169_14
Xanthomonas sacchari, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14029..14574
DNA (546bp) protein (182aa)
Uncharacterized protein n=1 Tax=Xanthomonas translucens DAR61454 RepID=L7FXD7_XANCT
Uncharacterized protein {ECO:0000313|EMBL:AJC44441.1}; TaxID=56458 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas sacchari.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_1169_15
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14705..15343
DNA (639bp) protein (213aa)
Aspartyl-tRNA ligase {ECO:0000313|EMBL:EIL96496.1}; EC=6.1.1.12 {ECO:0000313|EMBL:EIL96496.1};; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
Aspartate--tRNA ligase n=1 Tax=Rhodanobacter sp. 115 RepID=I4WAK5_9GAMM
Suspect SCG annotation. See neighboring gene [SCNpilot_expt_500_p_scaffold_1169_16].
aspartyl-tRNA synthetase
SCNpilot_expt_500_p_scaffold_1169_16
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


15292..16299
DNA (1008bp) protein (336aa)
Aspartyl-tRNA ligase {ECO:0000313|EMBL:EIL96496.1}; EC=6.1.1.12 {ECO:0000313|EMBL:EIL96496.1};; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
Aspartate--tRNA ligase n=1 Tax=Rhodanobacter sp. 115 RepID=I4WAK5_9GAMM
aspartyl-tRNA synthetase
SCNpilot_expt_500_p_scaffold_1169_17
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16430..17089
DNA (660bp) protein (220aa)
Lysophospholipase n=1 Tax=Rhodanobacter denitrificans RepID=I4WZH8_9GAMM
lysophospholipase
Lysophospholipase {ECO:0000313|EMBL:AGG87877.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_p_scaffold_1169_18
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17131..17844
DNA (714bp) protein (238aa)
Probable transcriptional regulatory protein UU5_06904 n=1 Tax=Rhodanobacter sp. 115 RepID=I4WAK7_9GAMM rbh
Probable transcriptional regulatory protein UU5_06904 {ECO:0000256|HAMAP-Rule:MF_00693}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
DNA-binding regulatory protein, YebC/PmpR family
SCNpilot_expt_500_p_scaffold_1169_19
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17954..18511
DNA (558bp) protein (186aa)
Crossover junction endodeoxyribonuclease RuvC {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106335}; EC=3.1.22.4 {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106388};; Holliday junction nuclease RuvC {ECO:0000256|HAMAP-Rule:MF_00034}; Holliday junction resolvase RuvC {ECO:0000256|HAMAP-Rule:MF_00034}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
Holliday junction endonuclease RuvC (EC:3.1.22.4)
Crossover junction endodeoxyribonuclease RuvC n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VY15_9GAMM rbh
SCNpilot_expt_500_p_scaffold_1169_20
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18508..19101
DNA (594bp) protein (198aa)
Holliday junction ATP-dependent DNA helicase RuvA {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058935}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058896};; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
Holliday junction DNA helicase RuvA n=1 Tax=Dyella ginsengisoli RepID=UPI00034834EC rbh
Holliday junction DNA helicase subunit RuvA
SCNpilot_expt_500_p_scaffold_1169_21
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19102..21039
DNA (1938bp) protein (646aa)
potassium transporter Kup n=1 Tax=Dyella ginsengisoli RepID=UPI000345891A rbh
Probable potassium transport system protein kup {ECO:0000256|HAMAP-Rule:MF_01522}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
K+ transporter
SCNpilot_expt_500_p_scaffold_1169_22
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21066..22961
DNA (1896bp) protein (632aa)
Probable potassium transport system protein kup n=1 Tax=Rhodanobacter sp. 115 RepID=I4W9Z0_9GAMM rbh
Probable potassium transport system protein kup {ECO:0000256|HAMAP-Rule:MF_01522}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
K+ transporter rbh
SCNpilot_expt_500_p_scaffold_1169_23
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23073..24122
DNA (1050bp) protein (350aa)
Holliday junction ATP-dependent DNA helicase RuvB n=1 Tax=Rhodanobacter denitrificans RepID=I4WZH3_9GAMM
Holliday junction DNA helicase subunit RuvB
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_500_p_scaffold_1169_24
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24115..24525
DNA (411bp) protein (137aa)
Tol-pal system-associated acyl-CoA thioesterase n=1 Tax=Rhodanobacter denitrificans RepID=I4WZH2_9GAMM
tol-pal system-associated acyl-CoA thioesterase
Tol-pal system-associated acyl-CoA thioesterase {ECO:0000313|EMBL:AGG87883.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_p_scaffold_1169_25
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24557..25240
DNA (684bp) protein (228aa)
Cell division and transport-associated protein TolQ n=1 Tax=Rhodanobacter denitrificans RepID=I4WZH1_9GAMM
Cell division and transport-associated protein TolQ
Cell division and transport-associated protein TolQ {ECO:0000313|EMBL:AGG87884.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_p_scaffold_1169_26
Frateuria aurantia, Frateuria, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25382..25594
DNA (213bp) protein (71aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI000347139B
TolR protein; K03560 biopolymer transport protein TolR
TolR protein {ECO:0000313|EMBL:AFC87204.1}; Flags: Precursor;; TaxID=767434 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Frateuria.;" source="Frateuria aurantia (strain ATCC 33424 / DSM 6220 / NBRC 3245 / NCIMB; 13370) (Acetobacter aurantius).;"
SCNpilot_expt_500_p_scaffold_1169_27
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25581..26528
DNA (948bp) protein (316aa)
F0F1-type ATP synthase, beta subunit n=1 Tax=Rhodanobacter denitrificans RepID=M4NJA7_9GAMM rbh
F0F1-type ATP synthase, beta subunit rbh
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_500_p_scaffold_1169_28
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26533..27855
DNA (1323bp) protein (441aa)
Protein TolB n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VY07_9GAMM rbh
Protein TolB {ECO:0000256|HAMAP-Rule:MF_00671}; Flags: Precursor;; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
tol-pal system beta propeller repeat protein TolB rbh
SCNpilot_expt_500_p_scaffold_1169_29
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28110..28619
DNA (510bp) protein (170aa)
Peptidoglycan-associated lipoprotein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VY06_9GAMM rbh
Peptidoglycan-associated lipoprotein {ECO:0000313|EMBL:EIL92097.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
peptidoglycan-associated lipoprotein
SCNpilot_expt_500_p_scaffold_1169_30
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28662..29495
DNA (834bp) protein (278aa)
Tol-pal system protein YbgF n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WGU4_9GAMM
Tol-pal system protein YbgF {ECO:0000313|EMBL:EIL98685.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
tol-pal system protein YbgF
Displaying items 1-30 of 46 in total

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