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SCNpilot_expt_500_p_scaffold_1185

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Displaying 13 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_1185_1
Burkholderia xenovorans, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2..1090)
DNA (1089bp) protein (363aa)
Hemagluttinin like protein n=1 Tax=Burkholderia xenovorans (strain LB400) RepID=Q13QC4_BURXL
hemagluttinin like protein
Hemagluttinin like protein {ECO:0000313|EMBL:ABE33715.1}; TaxID=266265 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia xenovorans (strain LB400).;"
SCNpilot_expt_500_p_scaffold_1185_2
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1450..2136)
DNA (687bp) protein (229aa)
Regulatory protein, LuxR:Response regulator receiver n=1 Tax=Stenotrophomonas sp. SKA14 RepID=B8L629_9GAMM
Stenotrophomonas maltophilia strain ZBG7B contig_71, whole genome shotgun sequence {ECO:0000313|EMBL:KIP82313.1}; TaxID=40324 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia (Pseudomonas maltophilia) (Xanthomonas; maltophilia).;"
two component LuxR family transcriptional regulator; K07687 two-component system, NarL family, captular synthesis response regulator RcsB
SCNpilot_expt_500_p_scaffold_1185_3
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2267..2971
DNA (705bp) protein (235aa)
Response regulator uvrY n=1 Tax=Stenotrophomonas maltophilia RA8 RepID=M5D083_STEMA
Stenotrophomonas maltophilia strain ZBG7B contig_71, whole genome shotgun sequence {ECO:0000313|EMBL:KIP82312.1}; TaxID=40324 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia (Pseudomonas maltophilia) (Xanthomonas; maltophilia).;"
two component LuxR family transcriptional regulator; K07687 two-component system, NarL family, captular synthesis response regulator RcsB
SCNpilot_expt_500_p_scaffold_1185_4
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3043..6462)
DNA (3420bp) protein (1140aa)
Hpt sensor hybrid histidine kinase; K07677 two-component system, NarL family, capsular synthesis sensor histidine kinase RcsC [EC:2.7.13.3] rbh
Hpt sensor hybrid histidine kinase n=1 Tax=Stenotrophomonas maltophilia JV3 RepID=G0K182_STEMA rbh
Stenotrophomonas maltophilia strain ZBG7B contig_71, whole genome shotgun sequence {ECO:0000313|EMBL:KIP82329.1}; TaxID=40324 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia (Pseudomonas maltophilia) (Xanthomonas; maltophilia).;"
SCNpilot_expt_500_p_scaffold_1185_5
unknown

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comp(6605..6934)
DNA (330bp) protein (110aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_1185_6
unknown

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comp(6973..7170)
DNA (198bp) protein (66aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_1185_7
Pseudomonas entomophila, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(7215..13241)
DNA (6027bp) protein (2009aa)
Putative outer membrane autotransporter n=1 Tax=Pseudomonas entomophila (strain L48) RepID=Q1IEN2_PSEE4
outer membrane autotransporter
Putative outer membrane autotransporter {ECO:0000313|EMBL:CAK13873.1}; TaxID=384676 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas entomophila (strain L48).;"
SCNpilot_expt_500_p_scaffold_1185_8
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(14183..14443)
DNA (261bp) protein (87aa)
putative carbonic anhydrase; K01673 carbonic anhydrase [EC:4.2.1.1]
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0002F66259
Carbonic anhydrase {ECO:0000313|EMBL:AHX13900.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
SCNpilot_expt_500_p_scaffold_1185_9
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(15478..16815)
DNA (1338bp) protein (446aa)
hypothetical protein id=1328169 bin=GWE1_T_denit_62_9 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb rbh
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_500_p_scaffold_1185_10
unknown

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comp(17421..17519)
DNA (99bp) protein (33aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_1185_11
Methylococcaceae bacterium Sn10-6, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(17543..18433)
DNA (891bp) protein (297aa)
N-6 DNA methylase; K03427 type I restriction enzyme M protein [EC:2.1.1.72]
DNA methyltransferase n=1 Tax=Pseudomonas aeruginosa DHS01 RepID=V4Z5E5_PSEAI
DNA methyltransferase {ECO:0000313|EMBL:KJV06910.1}; TaxID=1632867 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae.;" source="Methylococcaceae bacterium Sn10-6.;"
SCNpilot_expt_500_p_scaffold_1185_12
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19284..19655
DNA (372bp) protein (124aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WV10_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIM03302.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_1185_13
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19753..20223)
DNA (471bp) protein (157aa)
RNA polymerase sigma factor RpoD n=1 Tax=Dyella ginsengisoli RepID=UPI00034D49BB
RNA polymerase, sigma 70 subunit, RpoD
RNA polymerase sigma factor RpoD {ECO:0000256|HAMAP-Rule:MF_00963}; Sigma-70 {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
Displaying 13 items

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