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SCNpilot_expt_500_p_scaffold_1322

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_1322_1
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(253..744)
DNA (492bp) protein (164aa)
chemotaxis protein CheY n=1 Tax=Dyella japonica RepID=UPI0002E07436
Chemotaxis protein CheY {ECO:0000313|EMBL:AIF47008.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains
SCNpilot_expt_500_p_scaffold_1322_2
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(741..1526)
DNA (786bp) protein (262aa)
Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=1 Tax=Rhodanobacter denitrificans RepID=M4NEB9_9GAMM
response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains
Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains {ECO:0000313|EMBL:AGG87858.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_p_scaffold_1322_3
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1613..2689)
DNA (1077bp) protein (359aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034A4777 rbh
Alpha/beta hydrolase {ECO:0000313|EMBL:AIF47009.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
alpha/beta hydrolase
SCNpilot_expt_500_p_scaffold_1322_4
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2752..4416)
DNA (1665bp) protein (555aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI00030750FE rbh
Trehalase {ECO:0000313|EMBL:AIF47010.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
neutral trehalase
SCNpilot_expt_500_p_scaffold_1322_5
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4413..6680)
DNA (2268bp) protein (756aa)
Glycoside hydrolase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WAQ0_9GAMM rbh
Glycoside hydrolase family 65 {ECO:0000313|EMBL:AHX14552.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
trehalose/maltose hydrolase or phosphorylase
SCNpilot_expt_500_p_scaffold_1322_6
Brevundimonas abyssalis, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6677..8479)
DNA (1803bp) protein (601aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI0003771740 rbh
TPR domain protein {ECO:0000313|EMBL:GAD58948.1}; TaxID=1391729 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas abyssalis TAR-001.;"
hypothetical protein rbh
SCNpilot_expt_500_p_scaffold_1322_7
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8514..9782)
DNA (1269bp) protein (423aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI000376493D rbh
MFS transporter {ECO:0000313|EMBL:AHX14550.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
fucose permease rbh
SCNpilot_expt_500_p_scaffold_1322_8
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9871..12441)
DNA (2571bp) protein (857aa)
Outer membrane receptor protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NJ82_9GAMM
outer membrane receptor protein
Outer membrane receptor protein {ECO:0000313|EMBL:AGG87861.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_p_scaffold_1322_9
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12456..15545)
DNA (3090bp) protein (1030aa)
Beta-phosphoglucomutase n=1 Tax=Rhodanobacter denitrificans RepID=M4NDC0_9GAMM rbh
beta-phosphoglucomutase rbh
Beta-phosphoglucomutase {ECO:0000313|EMBL:AGG87862.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_p_scaffold_1322_10
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15787..16797
DNA (1011bp) protein (337aa)
LacI family transcriptional regulator n=1 Tax=Rhodanobacter sp. 115 RepID=I4VKL2_9GAMM rbh
LacI family transcriptional regulator {ECO:0000313|EMBL:EIL87753.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
transcriptional regulator rbh
SCNpilot_expt_500_p_scaffold_1322_11
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16807..18462)
DNA (1656bp) protein (552aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Two-component system sensor protein pils n=1 Tax=Rhodanobacter denitrificans RepID=I4WZJ0_9GAMM
signal transduction histidine kinase
SCNpilot_expt_500_p_scaffold_1322_12
unknown

Not on your lists

18773..18844
DNA (72bp) protein (24aa)

This feature has no annotations

Displaying 12 items

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