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SCNpilot_expt_500_p_scaffold_1406

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Displaying 21 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_1406_1
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..670)
DNA (669bp) protein (223aa)
K(+)-insensitive pyrophosphate-energized proton pump {ECO:0000256|HAMAP-Rule:MF_01129}; EC=3.6.1.1 {ECO:0000256|HAMAP-Rule:MF_01129};; Membrane-bound proton-translocating pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01129}; Pyrophosphate-energized inorganic pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01129}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
pyrophosphate-energized proton pump (EC:3.6.1.1); K15987 K(+)-stimulated pyrophosphate-energized sodium pump [EC:3.6.1.1]
K(+)-insensitive pyrophosphate-energized proton pump n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W394_9GAMM
SCNpilot_expt_500_p_scaffold_1406_2
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1354..1758)
DNA (405bp) protein (135aa)
Uncharacterized protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VRZ8_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL89989.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
putative integral membrane protein
SCNpilot_expt_500_p_scaffold_1406_3
Burkholderia sp. YI23, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1910..2728
DNA (819bp) protein (273aa)
Uncharacterized protein n=1 Tax=Burkholderia sp. YI23 RepID=G8MK95_9BURK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AET94813.1}; TaxID=1097668 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. YI23.;"
SCNpilot_expt_500_p_scaffold_1406_4
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2788..4056)
DNA (1269bp) protein (423aa)
6-phosphofructokinase (EC:2.7.1.90)
Pyrophosphate--fructose 6-phosphate 1-phosphotransferase {ECO:0000256|HAMAP-Rule:MF_01978}; EC=2.7.1.90 {ECO:0000256|HAMAP-Rule:MF_01978};; 6-phosphofructokinase, pyrophosphate dependent {ECO:0000256|HAMAP-Rule:MF_01978}; PPi-dependent phosphofructokinase {ECO:0000256|HAMAP-Rule:MF_01978}; Pyrophosphate-dependent 6-phosphofructose-1-kinase {ECO:0000256|HAMAP-Rule:MF_01978}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacte
6-phosphofructokinase n=1 Tax=Rhodanobacter denitrificans RepID=I4WHQ0_9GAMM
SCNpilot_expt_500_p_scaffold_1406_5
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4211..4795
DNA (585bp) protein (195aa)
Adenylate kinase {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331}; Short=AK {ECO:0000256|HAMAP-Rule:MF_00235};; EC=2.7.4.3 {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331};; ATP-AMP transphosphorylase {ECO:0000256|HAMAP-Rule:MF_00235}; ATP:AMP phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00235}; Adenylate monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_00235}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" s
adenylate kinase-like kinase (EC:2.7.4.3)
adenylate kinase n=1 Tax=Dyella japonica RepID=UPI0002E525C8 rbh
SCNpilot_expt_500_p_scaffold_1406_6
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4968..6323
DNA (1356bp) protein (452aa)
UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase; K02558 UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [EC:6.3.2.-] rbh
UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase n=1 Tax=Dyella japonica RepID=UPI00031991E8 rbh
UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase {ECO:0000313|EMBL:AIF45766.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
SCNpilot_expt_500_p_scaffold_1406_7
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6333..7751)
DNA (1419bp) protein (473aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4WDF1_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIL97492.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
SCNpilot_expt_500_p_scaffold_1406_8
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7748..8668)
DNA (921bp) protein (307aa)
ABC transporter ATP-binding protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4WDF0_9GAMM rbh
ABC transporter ATP-binding protein {ECO:0000313|EMBL:EIL97491.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
ABC transporter; K01990 ABC-2 type transport system ATP-binding protein
SCNpilot_expt_500_p_scaffold_1406_9
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8702..9370
DNA (669bp) protein (223aa)
Peptidase S16, lon domain-containing protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4WDE9_9GAMM rbh
Peptidase S16, lon domain-containing protein {ECO:0000313|EMBL:EIL97490.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
peptidase S16, lon domain protein
SCNpilot_expt_500_p_scaffold_1406_10
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9397..10215
DNA (819bp) protein (273aa)
Short chain dehydrogenase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WDT6_9GAMM
Short chain dehydrogenase {ECO:0000313|EMBL:EIL97627.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like protein
SCNpilot_expt_500_p_scaffold_1406_11
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10280..11509
DNA (1230bp) protein (410aa)
Acetylornithine aminotransferase {ECO:0000256|HAMAP-Rule:MF_01107}; Short=ACOAT {ECO:0000256|HAMAP-Rule:MF_01107};; EC=2.6.1.11 {ECO:0000256|HAMAP-Rule:MF_01107};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Acetylornithine aminotransferase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WDT5_9GAMM
acetylornithine/succinylornithine aminotransferase
SCNpilot_expt_500_p_scaffold_1406_12
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11506..11937
DNA (432bp) protein (144aa)
Histidine triad (HIT) protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VRZ1_9GAMM
Histidine triad (HIT) protein {ECO:0000313|EMBL:EIL89982.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
histidine triad (HIT) protein; K02503 Hit-like protein involved in cell-cycle regulation
SCNpilot_expt_500_p_scaffold_1406_13
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11996..12415
DNA (420bp) protein (140aa)
Glyoxalase/bleomycin resistance protein/dioxygenase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WDT4_9GAMM
Glyoxalase/bleomycin resistance protein/dioxygenase {ECO:0000313|EMBL:EIL97625.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
lactoylglutathione lyase-like lyase
SCNpilot_expt_500_p_scaffold_1406_14
Lysobacter arseniciresistens, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12416..13072)
DNA (657bp) protein (219aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0002DB0FBC
Uncharacterized protein {ECO:0000313|EMBL:KGM54583.1}; TaxID=913325 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter arseniciresistens ZS79.;"
putative transcriptional regulator
SCNpilot_expt_500_p_scaffold_1406_15
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13069..13725)
DNA (657bp) protein (219aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0002DDA729
Uncharacterized protein {ECO:0000313|EMBL:AHX15316.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_1406_16
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13849..14742)
DNA (894bp) protein (298aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00036236C0 rbh
Ion transporter {ECO:0000313|EMBL:KGI76644.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
Ion transport protein
SCNpilot_expt_500_p_scaffold_1406_17
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14747..16033)
DNA (1287bp) protein (429aa)
Glutamate-1-semialdehyde 2,1-aminomutase {ECO:0000256|HAMAP-Rule:MF_00375, ECO:0000256|SAAS:SAAS00088818}; Short=GSA {ECO:0000256|HAMAP-Rule:MF_00375};; EC=5.4.3.8 {ECO:0000256|HAMAP-Rule:MF_00375, ECO:0000256|SAAS:SAAS00088818};; Glutamate-1-semialdehyde aminotransferase {ECO:0000256|HAMAP-Rule:MF_00375}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
Glutamate-1-semialdehyde 2,1-aminomutase n=1 Tax=Rhodanobacter sp. 115 RepID=I4WC06_9GAMM rbh
glutamate-1-semialdehyde-2,1-aminomutase
SCNpilot_expt_500_p_scaffold_1406_18
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16048..16674)
DNA (627bp) protein (209aa)
Thiamine-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00097, ECO:0000256|RuleBase:RU003826}; Short=TP synthase {ECO:0000256|HAMAP-Rule:MF_00097};; Short=TPS {ECO:0000256|HAMAP-Rule:MF_00097};; EC=2.5.1.3 {ECO:0000256|HAMAP-Rule:MF_00097, ECO:0000256|RuleBase:RU003826};; Thiamine-phosphate pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00097, ECO:0000256|RuleBase:RU003826}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanob
Thiamine-phosphate synthase n=1 Tax=Rhodanobacter denitrificans RepID=I4WHQ9_9GAMM
thiamine-phosphate pyrophosphorylase
SCNpilot_expt_500_p_scaffold_1406_19
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16784..16981
DNA (198bp) protein (66aa)
rubredoxin n=1 Tax=Dyella japonica RepID=UPI0002FFFBA0
Rubredoxin {ECO:0000256|PIRNR:PIRNR000071}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
rubredoxin
SCNpilot_expt_500_p_scaffold_1406_20
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17100..17315
DNA (216bp) protein (72aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WHR1_9GAMM
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_500_p_scaffold_1406_21
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17219..17674)
DNA (456bp) protein (152aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WHR2_9GAMM
hypothetical protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
Displaying 21 items

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