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SCNpilot_expt_500_p_scaffold_1675

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Displaying items 1-30 of 33 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_1675_1
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..617
DNA (615bp) protein (205aa)
endopeptidase Clp ATP-binding regulatory subunit ClpX (EC:3.4.21.92)
ATP-dependent Clp protease ATP-binding subunit ClpX n=1 Tax=Rhodanobacter denitrificans RepID=I4WR59_9GAMM
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_500_p_scaffold_1675_2
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

855..3350
DNA (2496bp) protein (832aa)
Lon protease {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174}; EC=3.4.21.53 {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174};; ATP-dependent protease La {ECO:0000256|HAMAP-Rule:MF_01973}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
Lon protease n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W6N0_9GAMM
ATP-dependent proteinase
SCNpilot_expt_500_p_scaffold_1675_3
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3693..3965
DNA (273bp) protein (91aa)
transcriptional regulator n=1 Tax=Dyella ginsengisoli RepID=UPI000349F8D6
bacterial nucleoid DNA-binding protein
Nucleoid DNA-binding protein {ECO:0000313|EMBL:EIM01386.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
SCNpilot_expt_500_p_scaffold_1675_4
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4292..6199
DNA (1908bp) protein (636aa)
Peptidylprolyl isomerase {ECO:0000256|SAAS:SAAS00143148}; EC=5.2.1.8 {ECO:0000256|SAAS:SAAS00143148};; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
Peptidyl-prolyl cis-trans isomerase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VJX5_9GAMM rbh
parvulin-like peptidyl-prolyl isomerase
SCNpilot_expt_500_p_scaffold_1675_5
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6281..7525)
DNA (1245bp) protein (415aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0002E3CB0B rbh
Membrane-bound lytic murein transglycosylase D {ECO:0000313|EMBL:EIL87515.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
LysM repeat-containing protein rbh
SCNpilot_expt_500_p_scaffold_1675_6
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7522..8289)
DNA (768bp) protein (256aa)
Hydroxyacylglutathione hydrolase {ECO:0000256|HAMAP-Rule:MF_01374, ECO:0000256|SAAS:SAAS00035352}; EC=3.1.2.6 {ECO:0000256|HAMAP-Rule:MF_01374, ECO:0000256|SAAS:SAAS00035352};; Glyoxalase II {ECO:0000256|HAMAP-Rule:MF_01374}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Hydroxyacylglutathione hydrolase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WPJ7_9GAMM rbh
hydroxyacylglutathione hydrolase rbh
SCNpilot_expt_500_p_scaffold_1675_7
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8531..9214
DNA (684bp) protein (228aa)
Methylase involved in ubiquinone/menaquinone biosynthesis n=1 Tax=Rhodanobacter denitrificans RepID=I4WR65_9GAMM
methylase involved in ubiquinone/menaquinone biosynthesis
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_500_p_scaffold_1675_8
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9232..9675
DNA (444bp) protein (148aa)
Ribonuclease H {ECO:0000256|HAMAP-Rule:MF_00042, ECO:0000256|SAAS:SAAS00016437}; Short=RNase H {ECO:0000256|HAMAP-Rule:MF_00042};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00042, ECO:0000256|SAAS:SAAS00016437};; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
Ribonuclease H n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W6N6_9GAMM
ribonuclease HI
SCNpilot_expt_500_p_scaffold_1675_9
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9672..10412
DNA (741bp) protein (247aa)
DNA polymerase III, epsilon subunit (EC:2.7.7.7)
DNA polymerase III subunit epsilon n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WPK0_9GAMM rbh
DNA polymerase III subunit epsilon {ECO:0000313|EMBL:EIM01392.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
SCNpilot_expt_500_p_scaffold_1675_10
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10404..11105)
DNA (702bp) protein (234aa)
Protein phosphatase n=1 Tax=Rhodanobacter denitrificans RepID=I4WR68_9GAMM
serine/threonine protein phosphatase
Serine/threonine protein phosphatase {ECO:0000313|EMBL:AGG89360.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_p_scaffold_1675_11
Pandoraea sp. RB-44, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11345..11521
DNA (177bp) protein (59aa)
Toxin HicA n=2 Tax=Pandoraea RepID=V5UIG8_9BURK
hypothetical protein
Toxin HicA {ECO:0000313|EMBL:AHB77578.1}; TaxID=1380774 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea sp. RB-44.;"
SCNpilot_expt_500_p_scaffold_1675_12

Not on your lists

11540..11983
DNA (444bp) protein (148aa)
Uncharacterized protein family UPF0150 domain protein n=1 Tax=mine drainage metagenome RepID=T1D3R4_9ZZZZ
Uncharacterized protein family UPF0150 domain protein {ECO:0000313|EMBL:EQD76975.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_1675_13
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11950..12216)
DNA (267bp) protein (89aa)
Peptidase U35, phage prohead HK97 n=1 Tax=Rhodanobacter sp. 115 RepID=I4WED1_9GAMM
Peptidase U35, phage prohead HK97 {ECO:0000313|EMBL:EIL97822.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
SCNpilot_expt_500_p_scaffold_1675_14
unknown

Not on your lists

comp(12342..13298)
DNA (957bp) protein (319aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_1675_15
unknown

Not on your lists

comp(13326..13694)
DNA (369bp) protein (123aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_1675_16
unknown

Not on your lists

comp(13730..14107)
DNA (378bp) protein (126aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_1675_17
Arenimonas malthae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14781..15587)
DNA (807bp) protein (269aa)
hypothetical protein n=1 Tax=Singularimonas variicoloris RepID=UPI0003789765 rbh
Uncharacterized protein {ECO:0000313|EMBL:KFN47457.1}; TaxID=1384054 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas malthae CC-JY-1.;"
fatty acid hydroxylase rbh
SCNpilot_expt_500_p_scaffold_1675_18
RIFOXYA1_FULL_Xanthomonadales_68_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15680..16711
DNA (1032bp) protein (344aa)
hypothetical protein n=1 Tax=Singularimonas variicoloris RepID=UPI00035C342A rbh
araC; AraC family transcriptional regulator rbh
Tax=RIFOXYA1_FULL_Xanthomonadales_68_6_curated
SCNpilot_expt_500_p_scaffold_1675_19
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16722..19094)
DNA (2373bp) protein (791aa)
Phosphoenolpyruvate synthase {ECO:0000256|PIRNR:PIRNR000854}; Short=PEP synthase {ECO:0000256|PIRNR:PIRNR000854};; EC=2.7.9.2 {ECO:0000256|PIRNR:PIRNR000854};; Pyruvate, water dikinase {ECO:0000256|PIRNR:PIRNR000854}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
phosphoenolpyruvate synthase (EC:2.7.9.2) rbh
phosphoenolpyruvate synthase n=1 Tax=Dyella ginsengisoli RepID=UPI00034A4796 rbh
SCNpilot_expt_500_p_scaffold_1675_20
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19395..20210
DNA (816bp) protein (272aa)
Putative phosphoenolpyruvate synthase regulatory protein {ECO:0000256|HAMAP-Rule:MF_01062, ECO:0000256|SAAS:SAAS00213394}; Short=PEP synthase regulatory protein {ECO:0000256|HAMAP-Rule:MF_01062};; Short=PSRP {ECO:0000256|HAMAP-Rule:MF_01062};; EC=2.7.11.33 {ECO:0000256|HAMAP-Rule:MF_01062, ECO:0000256|SAAS:SAAS00160002};; EC=2.7.4.28 {ECO:0000256|HAMAP-Rule:MF_01062, ECO:0000256|SAAS:SAAS00159999};; Pyruvate, water dikinase regulatory protein {ECO:0000256|HAMAP-Rule:MF_01062}; TaxID=1162282 species="Bacteri
Putative phosphoenolpyruvate synthase regulatory protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WR70_9GAMM
hypothetical protein
SCNpilot_expt_500_p_scaffold_1675_21
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20239..20736
DNA (498bp) protein (166aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WR71_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG89357.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_p_scaffold_1675_22
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21228..22997
DNA (1770bp) protein (590aa)
Sodium/hydrogen exchanger family protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WR72_9GAMM rbh
Kef-type K+ transport system, predicted NAD-binding component rbh
Kef-type K+ transport system, predicted NAD-binding component {ECO:0000313|EMBL:AGG89356.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_p_scaffold_1675_23
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23182..23934
DNA (753bp) protein (251aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU003915, ECO:0000256|RuleBase:RU004231}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU003915};; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Peptidyl-prolyl cis-trans isomerase n=1 Tax=Rhodanobacter denitrificans RepID=I4WR73_9GAMM rbh
FKBP-type peptidyl-prolyl cis-trans isomerase rbh
SCNpilot_expt_500_p_scaffold_1675_24
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24059..25402
DNA (1344bp) protein (448aa)
UDP-glucose 6-dehydrogenase n=1 Tax=Dyella japonica RepID=UPI0002EB0FB7 rbh
UDP-glucose 6-dehydrogenase {ECO:0000313|EMBL:AIF48362.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
nucleotide sugar dehydrogenase
SCNpilot_expt_500_p_scaffold_1675_25
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25402..25614
DNA (213bp) protein (71aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4VZN9_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL92680.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_1675_26
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25830..26387
DNA (558bp) protein (186aa)
Nucleoprotein/polynucleotide-associated enzyme n=1 Tax=Rhodanobacter sp. 115 RepID=I4VZP0_9GAMM
Nucleoprotein/polynucleotide-associated enzyme {ECO:0000313|EMBL:EIL92681.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_1675_27
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26915..28978)
DNA (2064bp) protein (688aa)
3-hydroxyacyl-CoA dehydrogenase (EC:1.1.1.35 4.2.1.17)
Putative enoyl-CoA hydratasee n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WPL0_9GAMM rbh
Putative enoyl-CoA hydratasee {ECO:0000313|EMBL:EIM01402.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
SCNpilot_expt_500_p_scaffold_1675_28
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29248..29742
DNA (495bp) protein (165aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WR78_9GAMM
hypothetical protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_500_p_scaffold_1675_29
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29754..31973
DNA (2220bp) protein (740aa)
Diguanylate cyclase (GGDEF) domain-containing protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NEW5_9GAMM
diguanylate cyclase (GGDEF) domain-containing protein
Diguanylate cyclase (GGDEF) domain-containing protein {ECO:0000313|EMBL:AGG89349.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_p_scaffold_1675_30
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32146..32760
DNA (615bp) protein (205aa)
RNA polymerase sigma factor RpoE n=1 Tax=Rhodanobacter denitrificans RepID=I4WR80_9GAMM rbh
RNA polymerase, sigma-24 subunit, RpoE rbh
RNA polymerase, sigma-24 subunit, RpoE {ECO:0000313|EMBL:AGG89348.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Displaying items 1-30 of 33 in total

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