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SCNpilot_expt_500_p_scaffold_1771

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Displaying 19 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_1771_1
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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174..923
DNA (750bp) protein (250aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Pseudouridine synthase n=1 Tax=Rhodanobacter denitrificans RepID=M4ND80_9GAMM
pseudouridine synthase family protein
SCNpilot_expt_500_p_scaffold_1771_2
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(934..2127)
DNA (1194bp) protein (398aa)
2-amino-3-ketobutyrate coenzyme A ligase {ECO:0000256|HAMAP-Rule:MF_00985}; Short=AKB ligase {ECO:0000256|HAMAP-Rule:MF_00985};; EC=2.3.1.29 {ECO:0000256|HAMAP-Rule:MF_00985};; Glycine acetyltransferase {ECO:0000256|HAMAP-Rule:MF_00985}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
2-amino-3-ketobutyrate coenzyme A ligase (EC:2.3.1.29) rbh
2-amino-3-ketobutyrate coenzyme A ligase n=1 Tax=Rhodanobacter sp. 115 RepID=I4W9I3_9GAMM rbh
SCNpilot_expt_500_p_scaffold_1771_3
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2188..5811)
DNA (3624bp) protein (1208aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WIU9_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIL99390.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
uncharacterized protein involved in outer membrane biogenesis rbh
SCNpilot_expt_500_p_scaffold_1771_4
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5950..6984)
DNA (1035bp) protein (345aa)
L-threonine 3-dehydrogenase (EC:1.1.1.103)
L-threonine 3-dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00627, ECO:0000256|SAAS:SAAS00056053}; EC=1.1.1.103 {ECO:0000256|HAMAP-Rule:MF_00627, ECO:0000256|SAAS:SAAS00056053};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
L-threonine 3-dehydrogenase n=2 Tax=Rhodanobacter denitrificans RepID=M4NGB9_9GAMM
SCNpilot_expt_500_p_scaffold_1771_5
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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7118..9253
DNA (2136bp) protein (712aa)
Putative lipoprotein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WIU7_9GAMM rbh
Putative lipoprotein {ECO:0000313|EMBL:EIL99388.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
putative Glycogen debranching enzyme rbh
SCNpilot_expt_500_p_scaffold_1771_6
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9359..11521
DNA (2163bp) protein (721aa)
Peptidase S46 n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WIU6_9GAMM rbh
Peptidase S46 {ECO:0000313|EMBL:EIL99387.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
uncharacterized protein involved in exopolysaccharide biosynthesis rbh
SCNpilot_expt_500_p_scaffold_1771_7
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11632..14850
DNA (3219bp) protein (1073aa)
Peptidase S46 n=1 Tax=Rhodanobacter denitrificans RepID=M4ND84_9GAMM rbh
Peptidase S46 {ECO:0000313|EMBL:AGG88700.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Peptidase S46 rbh
SCNpilot_expt_500_p_scaffold_1771_8
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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15004..15282
DNA (279bp) protein (93aa)
RNA-binding protein Hfq n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VW35_9GAMM
RNA-binding protein Hfq {ECO:0000256|HAMAP-Rule:MF_00436, ECO:0000256|SAAS:SAAS00067493}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
RNA-binding protein Hfq
SCNpilot_expt_500_p_scaffold_1771_9
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15355..16686
DNA (1332bp) protein (444aa)
GTPase HflX n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WIU2_9GAMM rbh
GTPase HflX {ECO:0000256|HAMAP-Rule:MF_00900}; GTP-binding protein HflX {ECO:0000256|HAMAP-Rule:MF_00900}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
GTP-binding protein HflX rbh
SCNpilot_expt_500_p_scaffold_1771_10
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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16840..17919
DNA (1080bp) protein (360aa)
Integral membrane protease subunit n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VPB7_9GAMM
Integral membrane protease subunit {ECO:0000313|EMBL:EIL89058.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
HflK protein
SCNpilot_expt_500_p_scaffold_1771_11
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17916..18788
DNA (873bp) protein (291aa)
Protein HflC n=1 Tax=Rhodanobacter denitrificans RepID=M4ND89_9GAMM
membrane protease subunit, stomatin/prohibitin
Protein HflC {ECO:0000256|PIRNR:PIRNR005651}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_p_scaffold_1771_12
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19109..20401
DNA (1293bp) protein (431aa)
Adenylosuccinate synthetase {ECO:0000256|HAMAP-Rule:MF_00011, ECO:0000256|RuleBase:RU000520}; Short=AMPSase {ECO:0000256|HAMAP-Rule:MF_00011};; Short=AdSS {ECO:0000256|HAMAP-Rule:MF_00011};; EC=6.3.4.4 {ECO:0000256|HAMAP-Rule:MF_00011, ECO:0000256|RuleBase:RU000520};; IMP--aspartate ligase {ECO:0000256|HAMAP-Rule:MF_00011}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
Adenylosuccinate synthetase (EC:6.3.4.4) rbh
Adenylosuccinate synthetase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VPC0_9GAMM rbh
SCNpilot_expt_500_p_scaffold_1771_13
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20533..20979
DNA (447bp) protein (149aa)
Peptide methionine sulfoxide reductase MsrB {ECO:0000256|HAMAP-Rule:MF_01400}; EC=1.8.4.12 {ECO:0000256|HAMAP-Rule:MF_01400};; Peptide-methionine (R)-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01400}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
methionine sulfoxide reductase B; K07305 peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12]
Peptide methionine sulfoxide reductase MsrB n=1 Tax=Rhodanobacter sp. 115 RepID=I4W566_9GAMM
SCNpilot_expt_500_p_scaffold_1771_14
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20979..21494
DNA (516bp) protein (172aa)
Peptide methionine sulfoxide reductase MsrA {ECO:0000256|HAMAP-Rule:MF_01401}; Short=Protein-methionine-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401};; EC=1.8.4.11 {ECO:0000256|HAMAP-Rule:MF_01401};; Peptide-methionine (S)-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
Peptide methionine sulfoxide reductase MsrA n=1 Tax=Rhodanobacter sp. 115 RepID=I4W565_9GAMM rbh
methionine-S-sulfoxide reductase
SCNpilot_expt_500_p_scaffold_1771_15
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(21535..21906)
DNA (372bp) protein (124aa)
hypothetical protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002E4BAF8
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCP14481.1}; TaxID=1118157 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia RA8.;"
SCNpilot_expt_500_p_scaffold_1771_16
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21928..22698)
DNA (771bp) protein (257aa)
Response regulator of the LytR/AlgR family n=1 Tax=Rhodanobacter denitrificans RepID=M4NDD2_9GAMM rbh
response regulator of the LytR/AlgR family rbh
Response regulator of the LytR/AlgR family {ECO:0000313|EMBL:AGG88724.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_p_scaffold_1771_17
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22695..23957)
DNA (1263bp) protein (421aa)
Putative regulator of cell autolysis n=1 Tax=Rhodanobacter denitrificans RepID=M4NDA4_9GAMM rbh
putative regulator of cell autolysis rbh
Putative regulator of cell autolysis {ECO:0000313|EMBL:AGG88725.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_p_scaffold_1771_18
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24238..26892
DNA (2655bp) protein (885aa)
aminopeptidase N; K01256 aminopeptidase N [EC:3.4.11.2] rbh
Aminopeptidase n=1 Tax=Rhodanobacter sp. 115 RepID=I4VPL5_9GAMM rbh
Aminopeptidase {ECO:0000313|EMBL:EIL89156.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
SCNpilot_expt_500_p_scaffold_1771_19
Cellvibrio sp. BR, Cellvibrio, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26965..28326)
DNA (1362bp) protein (454aa)
patB; Aminotransferases class-I; K14155 cystathione beta-lyase [EC:4.4.1.8]
Aminotransferases class-I n=1 Tax=Cellvibrio sp. BR RepID=I3IAM2_9GAMM
Aminotransferases class-I {ECO:0000313|EMBL:EIK45107.1}; TaxID=1134474 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Cellvibrio.;" source="Cellvibrio sp. BR.;"
Displaying 19 items

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