ggKbase home page

SCNpilot_expt_500_p_scaffold_74

Search features with annotation key words

Displaying items 1-30 of 151 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_74_1
unknown

Not on your lists

comp(2..79)
DNA (78bp) protein (26aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_74_2
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(281..1015)
DNA (735bp) protein (245aa)
Acyl-CoA hydrolase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W2R6_9GAMM
Acyl-CoA hydrolase {ECO:0000313|EMBL:EIL93757.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
acyl-CoA hydrolase
SCNpilot_expt_500_p_scaffold_74_3
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1050..3053)
DNA (2004bp) protein (668aa)
peptidase t2 asparaginase 2; K13051 beta-aspartyl-peptidase (threonine type) [EC:3.4.19.5] rbh
Peptidase t2 asparaginase 2 n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W2R9_9GAMM rbh
Peptidase t2 asparaginase 2 {ECO:0000313|EMBL:EIL93760.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
SCNpilot_expt_500_p_scaffold_74_4
Lysobacter capsici, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3201..3800
DNA (600bp) protein (200aa)
Two-component system regulatory protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W2S0_9GAMM
Transcriptional regulator {ECO:0000313|EMBL:EYR67012.1}; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici AZ78.;"
two-component system regulatory protein; K03088 RNA polymerase sigma-70 factor, ECF subfamily
SCNpilot_expt_500_p_scaffold_74_5
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3778..4809
DNA (1032bp) protein (344aa)
histidine kinase n=1 Tax=Xanthomonas sacchari RepID=UPI00026300E7
Two-component system sensor protein {ECO:0000313|EMBL:EIL93762.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
Fe2+-dicitrate sensor, membrane component
SCNpilot_expt_500_p_scaffold_74_6
RIFOXYA1_FULL_Xanthomonadales_68_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4899..7958
DNA (3060bp) protein (1020aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00035D6735
TonB-dependent receptor
Tax=RIFOXYA1_FULL_Xanthomonadales_68_6_curated
SCNpilot_expt_500_p_scaffold_74_7

Not on your lists

7951..10023
DNA (2073bp) protein (691aa)
Peptidase S9 prolyl oligopeptidase active site domain protein n=1 Tax=mine drainage metagenome RepID=T1CBY4_9ZZZZ
Peptidase S9 prolyl oligopeptidase active site domain protein {ECO:0000313|EMBL:EQD64105.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
peptidase S9 prolyl oligopeptidase
SCNpilot_expt_500_p_scaffold_74_8
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10119..11210)
DNA (1092bp) protein (364aa)
GTP-binding protein YchF n=1 Tax=Dyella japonica RepID=UPI0002F60E30 rbh
Ribosome-binding ATPase YchF {ECO:0000256|HAMAP-Rule:MF_00944}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
GTP-binding protein YchF rbh
SCNpilot_expt_500_p_scaffold_74_9
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11294..11878)
DNA (585bp) protein (195aa)
Peptidyl-tRNA hydrolase {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673}; Short=PTH {ECO:0000256|HAMAP-Rule:MF_00083};; EC=3.1.1.29 {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673};; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
peptidyl-tRNA hydrolase (EC:3.1.1.29)
Peptidyl-tRNA hydrolase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W2S4_9GAMM
SCNpilot_expt_500_p_scaffold_74_10
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(11933..12607)
DNA (675bp) protein (225aa)
50S ribosomal protein L25 n=1 Tax=Dyella ginsengisoli RepID=UPI000345573A rbh
50S ribosomal protein L25 {ECO:0000256|HAMAP-Rule:MF_01334, ECO:0000256|SAAS:SAAS00147491}; General stress protein CTC {ECO:0000256|HAMAP-Rule:MF_01334, ECO:0000256|SAAS:SAAS00023359}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
ribosomal protein L25, Ctc-form rbh
SCNpilot_expt_500_p_scaffold_74_11
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12773..13714)
DNA (942bp) protein (314aa)
ribose-phosphate pyrophosphokinase n=1 Tax=Dyella ginsengisoli RepID=UPI00037B470F rbh
ribose-phosphate pyrophosphokinase rbh
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_500_p_scaffold_74_12
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13950..15347)
DNA (1398bp) protein (466aa)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090350}; Short=CMK {ECO:0000256|HAMAP-Rule:MF_00061};; EC=2.7.1.148 {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090262};; 4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC:2.7.1.148)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase n=1 Tax=Rhodanobacter sp. 115 RepID=I4W539_9GAMM rbh
SCNpilot_expt_500_p_scaffold_74_13
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15376..15981)
DNA (606bp) protein (202aa)
Outer membrane lipoprotein LolB n=1 Tax=Rhodanobacter sp. 115 RepID=I4W540_9GAMM rbh
Outer-membrane lipoprotein LolB {ECO:0000256|SAAS:SAAS00002103}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
outer membrane lipoprotein LolB rbh
SCNpilot_expt_500_p_scaffold_74_14
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15978..17777)
DNA (1800bp) protein (600aa)
Flp pilus assembly protein TadD n=1 Tax=Rhodanobacter denitrificans RepID=M4NK11_9GAMM
Flp pilus assembly protein TadD
Flp pilus assembly protein TadD {ECO:0000313|EMBL:AGG88111.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_p_scaffold_74_15
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17845..19122
DNA (1278bp) protein (426aa)
glutamyl-tRNA reductase (EC:1.2.1.70)
Glutamyl-tRNA reductase {ECO:0000256|HAMAP-Rule:MF_00087, ECO:0000256|RuleBase:RU000584}; Short=GluTR {ECO:0000256|HAMAP-Rule:MF_00087};; EC=1.2.1.70 {ECO:0000256|HAMAP-Rule:MF_00087, ECO:0000256|RuleBase:RU000584};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Glutamyl-tRNA reductase n=1 Tax=Rhodanobacter denitrificans RepID=I4WG32_9GAMM
SCNpilot_expt_500_p_scaffold_74_16
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19204..20283
DNA (1080bp) protein (360aa)
Peptide chain release factor 1 n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W2T1_9GAMM
Peptide chain release factor 1 {ECO:0000256|HAMAP-Rule:MF_00093}; Short=RF-1 {ECO:0000256|HAMAP-Rule:MF_00093};; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
bacterial peptide chain release factor 1 (bRF-1)
SCNpilot_expt_500_p_scaffold_74_17
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20345..21115
DNA (771bp) protein (257aa)
Polyphosphate kinase 2, PA0141 family protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W2T2_9GAMM rbh
Polyphosphate kinase {ECO:0000313|EMBL:AHX14301.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
polyphosphate kinase 2, PA0141 family rbh
SCNpilot_expt_500_p_scaffold_74_18
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21126..21392)
DNA (267bp) protein (89aa)
Acylphosphatase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VJ21_9GAMM
Acylphosphatase {ECO:0000313|EMBL:EIL87212.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
acylphosphatase
SCNpilot_expt_500_p_scaffold_74_19
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21392..21871)
DNA (480bp) protein (160aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0002EFC18D
Thiol-disulfide isomerase-like thioredoxin {ECO:0000313|EMBL:EIM02682.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
thiol-disulfide isomerase-like thioredoxin
SCNpilot_expt_500_p_scaffold_74_20
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21868..23142)
DNA (1275bp) protein (425aa)
hypothetical protein (EC:3.1.-.-)
UPF0761 membrane protein rbn n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WKP0_9GAMM
UPF0761 membrane protein rbn {ECO:0000256|HAMAP-Rule:MF_00672}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
SCNpilot_expt_500_p_scaffold_74_21
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23325..23924
DNA (600bp) protein (200aa)
NAD(P)H dehydrogenase (quinone) {ECO:0000256|HAMAP-Rule:MF_01017, ECO:0000256|SAAS:SAAS00064138}; EC=1.6.5.2 {ECO:0000256|HAMAP-Rule:MF_01017, ECO:0000256|SAAS:SAAS00064138};; NAD(P)H:quinone oxidoreductase {ECO:0000256|HAMAP-Rule:MF_01017}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
NAD(P)H dehydrogenase (quinone) n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VJ18_9GAMM rbh
NAD(P)H:quinone oxidoreductase, type IV
SCNpilot_expt_500_p_scaffold_74_22
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23921..24268
DNA (348bp) protein (116aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4WT93_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIM02685.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_74_23
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24300..24767
DNA (468bp) protein (156aa)
cupin n=1 Tax=Pseudomonas pyrrocinia RepID=UPI0002E8D9D7
Cupin {ECO:0000313|EMBL:AHX14309.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
cupin
SCNpilot_expt_500_p_scaffold_74_24
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24914..26554
DNA (1641bp) protein (547aa)
Acyl-CoA dehydrogenase n=1 Tax=Rhodanobacter sp. 115 RepID=I4WT95_9GAMM
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:EIM02687.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
acyl-CoA dehydrogenase
SCNpilot_expt_500_p_scaffold_74_25
Terriglobus roseus, Terriglobus, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

26554..27111
DNA (558bp) protein (186aa)
Adenylate kinase-like kinase n=1 Tax=Terriglobus roseus (strain DSM 18391 / NRRL B-41598 / KBS 63) RepID=I3ZKG4_TERRK
adenylate kinase-like kinase
Adenylate kinase-like kinase {ECO:0000313|EMBL:AFL89732.1}; TaxID=926566 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Terriglobus.;" source="Terriglobus roseus (strain DSM 18391 / NRRL B-41598 / KBS 63).;"
SCNpilot_expt_500_p_scaffold_74_26
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27196..27687
DNA (492bp) protein (164aa)
L-asparaginase/GlutRNAGln amidotransferase subunit D (EC:3.5.1.1)
Putative asparaginase n=1 Tax=Rhodanobacter sp. 115 RepID=I4WT97_9GAMM rbh
Putative asparaginase {ECO:0000313|EMBL:EIM02689.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
SCNpilot_expt_500_p_scaffold_74_27
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27794..29089)
DNA (1296bp) protein (432aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034C8E8F rbh
Transporter {ECO:0000313|EMBL:AHX13567.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
outer membrane efflux protein
SCNpilot_expt_500_p_scaffold_74_28
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29086..29397)
DNA (312bp) protein (104aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034BDCF1
Uncharacterized protein {ECO:0000313|EMBL:AHX13568.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_74_29
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29401..32472)
DNA (3072bp) protein (1024aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI000349FF74 rbh
Cytochrome C peroxidase {ECO:0000313|EMBL:KGI76679.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
CzcA family heavy metal efflux protein
SCNpilot_expt_500_p_scaffold_74_30
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32474..33502)
DNA (1029bp) protein (343aa)
Efflux transporter, RND family, MFP subunit n=1 Tax=Delftia acidovorans (strain DSM 14801 / SPH-1) RepID=A9BTT4_DELAS
Uncharacterized protein {ECO:0000313|EMBL:AHX16306.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
RND family efflux transporter MFP subunit
Displaying items 1-30 of 151 in total

View Taxonomy
NameRatio
Rhodanobacter
58.94%
Dyella
12.58%
unknown
11.26%
Oleiagrimonas
3.31%
Arenimonas
2.65%
Xanthomonas
1.99%
Scytonema
1.32%
Lysobacter
1.32%
Xylella
0.66%
Terriglobus
0.66%
Stenotrophomonas
0.66%
Pseudomonas
0.66%
Hydrocarboniphaga
0.66%
Escherichia
0.66%
Aquabacterium
0.66%
Anaerotruncus
0.66%
Achromobacter
0.66%
Acetobacter
0.66%
Rhodanobacter: 0.5894039735099338Dyella: 0.12582781456953643unknown: 0.11258278145695365Oleiagrimonas: 0.033112582781456956Arenimonas: 0.026490066225165563Xanthomonas: 0.019867549668874173Lysobacter: 0.013245033112582781Scytonema: 0.013245033112582781Acetobacter: 0.006622516556291391Achromobacter: 0.006622516556291391Anaerotruncus: 0.006622516556291391Aquabacterium: 0.006622516556291391Escherichia: 0.006622516556291391Hydrocarboniphaga: 0.006622516556291391Pseudomonas: 0.006622516556291391Stenotrophomonas: 0.006622516556291391Terriglobus: 0.006622516556291391Xylella: 0.006622516556291391RhodanobacterDyellaunknown