ggKbase home page

SCNpilot_expt_500_p_scaffold_201

Search features with annotation key words

Displaying items 1-30 of 176 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_201_1
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(272..1342)
DNA (1071bp) protein (357aa)
GTPase CgtA n=1 Tax=Dyella ginsengisoli RepID=UPI00034BBE4E rbh
GTPase Obg {ECO:0000256|HAMAP-Rule:MF_01454}; GTP-binding protein Obg {ECO:0000256|HAMAP-Rule:MF_01454}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
Obg family GTPase CgtA
SCNpilot_expt_500_p_scaffold_201_2
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(1534..1791)
DNA (258bp) protein (86aa)
50S ribosomal protein L27 n=1 Tax=Dyella japonica RepID=UPI0002F1F926
50S ribosomal protein L27 {ECO:0000256|HAMAP-Rule:MF_00539}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
50S ribosomal protein L27; K02899 large subunit ribosomal protein L27
SCNpilot_expt_500_p_scaffold_201_3
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(1812..2126)
DNA (315bp) protein (105aa)
50S ribosomal protein L21 n=1 Tax=Dyella ginsengisoli RepID=UPI00034510E4
50S ribosomal protein L21 {ECO:0000256|HAMAP-Rule:MF_01363, ECO:0000256|RuleBase:RU000562}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
ribosomal protein L21
SCNpilot_expt_500_p_scaffold_201_4
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2674..5202
DNA (2529bp) protein (843aa)
UvrABC system protein A n=1 Tax=Rhodanobacter sp. 115 RepID=I4W4K5_9GAMM
UvrABC system protein A {ECO:0000256|HAMAP-Rule:MF_00205, ECO:0000256|SAAS:SAAS00088996}; Short=UvrA protein {ECO:0000256|HAMAP-Rule:MF_00205};; Excinuclease ABC subunit A {ECO:0000256|HAMAP-Rule:MF_00205}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
Excinuclease ABC subunit A
SCNpilot_expt_500_p_scaffold_201_5
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5199..5693
DNA (495bp) protein (165aa)
4-hydroxybenzoyl-CoA thioesterase n=1 Tax=Rhodanobacter sp. 115 RepID=I4W4K4_9GAMM
4-hydroxybenzoyl-CoA thioesterase {ECO:0000313|EMBL:EIL94395.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
putative thioesterase
SCNpilot_expt_500_p_scaffold_201_6
Burkholderia phytofirmans, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5995..6684)
DNA (690bp) protein (230aa)
Uncharacterized protein n=1 Tax=Escherichia coli KTE16 RepID=L2WHC0_ECOLX
putative secreted protein
Putative secreted protein {ECO:0000313|EMBL:ACD21667.1}; Flags: Precursor;; TaxID=398527 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia phytofirmans (strain DSM 17436 / PsJN).;"
SCNpilot_expt_500_p_scaffold_201_7
unknown

Not on your lists

comp(6791..7252)
DNA (462bp) protein (154aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_201_8
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7811..10063)
DNA (2253bp) protein (751aa)
N-acetyl-beta-hexosaminidase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VRX4_9GAMM rbh
N-acetyl-beta-hexosaminidase {ECO:0000313|EMBL:EIL89965.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
beta-hexosaminidase precursor rbh
SCNpilot_expt_500_p_scaffold_201_9
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10331..11371
DNA (1041bp) protein (347aa)
oxidoreductase; K00064 D-threo-aldose 1-dehydrogenase [EC:1.1.1.122] rbh
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0002F7D17E rbh
Oxidoreductase {ECO:0000313|EMBL:AIF48108.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
SCNpilot_expt_500_p_scaffold_201_10
Xanthomonas sacchari, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11382..12257
DNA (876bp) protein (292aa)
amidohydrolase n=1 Tax=Xanthomonas sp. SHU308 RepID=UPI00037BC930 rbh
Amidohydrolase {ECO:0000313|EMBL:AJC46936.1}; TaxID=56458 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas sacchari.;"
hypothetical protein; K07046 rbh
SCNpilot_expt_500_p_scaffold_201_11
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12223..13032
DNA (810bp) protein (270aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0002DC9AE3 rbh
2-keto-3-deoxy-L-fuconate dehydrogenase {ECO:0000313|EMBL:AIF48106.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
short-chain dehydrogenase/reductase rbh
SCNpilot_expt_500_p_scaffold_201_12
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13055..13915
DNA (861bp) protein (287aa)
2-hydroxyhepta-2,4-diene-1,7-dioate isomerase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4W116_9GAMM rbh
2-hydroxyhepta-2,4-diene-1,7-dioate isomerase {ECO:0000313|EMBL:EIL93157.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
2-hydroxyhepta-2,4-diene-1,7-dioate isomerase rbh
SCNpilot_expt_500_p_scaffold_201_13
Xanthomonas albilineans, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13912..15240
DNA (1329bp) protein (443aa)
fuconate dehydratase n=1 Tax=Xanthomonas sacchari RepID=UPI000262AB44 rbh
mandelate racemase/muconate lactonizing enzyme protein rbh
Putative mandelate racemase/muconate lactonizing enzyme protein {ECO:0000313|EMBL:CBA14982.1}; TaxID=380358 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas albilineans (strain GPE PC73 / CFBP 7063).;"
SCNpilot_expt_500_p_scaffold_201_14
CG_Arma_01, Armatimonadetes, Bacteria

Not on your lists

15258..16679
DNA (1422bp) protein (474aa)
alpha-L-fucosidase (EC:3.2.1.51); K01206 alpha-L-fucosidase [EC:3.2.1.51] rbh
alpha-L-fucosidase n=1 Tax=Acidobacteriaceae bacterium TAA166 RepID=UPI0003B5C6C1 rbh
Tax=CG_Arma_01
SCNpilot_expt_500_p_scaffold_201_15
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16683..17072)
DNA (390bp) protein (130aa)
hypothetical protein; K03534 L-rhamnose mutarotase [EC:5.1.3.-]
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00037BE16E
Uncharacterized protein {ECO:0000313|EMBL:AIF48100.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
SCNpilot_expt_500_p_scaffold_201_16
Xanthomonas albilineans, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17072..18391)
DNA (1320bp) protein (440aa)
Putative l-fucose-proton symporter protein n=1 Tax=Xanthomonas albilineans (strain GPE PC73 / CFBP 7063) RepID=D2UB55_XANAP rbh
l-fucose-proton symporter protein; K02429 MFS transporter, FHS family, L-fucose permease rbh
Putative l-fucose-proton symporter protein {ECO:0000313|EMBL:CBA14984.1}; TaxID=380358 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas albilineans (strain GPE PC73 / CFBP 7063).;"
SCNpilot_expt_500_p_scaffold_201_17
unknown

Not on your lists

18431..18532
DNA (102bp) protein (34aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_201_18
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18576..19397
DNA (822bp) protein (274aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0002D82AB3 rbh
Transcriptional regulator {ECO:0000313|EMBL:AIF48099.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
transcriptional regulator
SCNpilot_expt_500_p_scaffold_201_19
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19507..20967
DNA (1461bp) protein (487aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4W4K0_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIL94391.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_201_20
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20989..21744
DNA (756bp) protein (252aa)
Putative enoyl-CoA hydratase n=1 Tax=Rhodanobacter denitrificans RepID=I4WPQ8_9GAMM
Enoyl-CoA hydratase/isomerase {ECO:0000313|EMBL:EIL96646.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
enoyl-CoA hydratase/carnithine racemase
SCNpilot_expt_500_p_scaffold_201_21
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21751..22236)
DNA (486bp) protein (162aa)
Acetyltransferase, N-acetylglutamate synthase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WB06_9GAMM
Acetyltransferase, N-acetylglutamate synthase {ECO:0000313|EMBL:EIL96647.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
acetyltransferase, N-acetylglutamate synthase
SCNpilot_expt_500_p_scaffold_201_22
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22247..23095)
DNA (849bp) protein (283aa)
Rhodanese-related sulfurtransferase n=1 Tax=Rhodanobacter sp. 115 RepID=I4W4J1_9GAMM rbh
Rhodanese-related sulfurtransferase {ECO:0000313|EMBL:EIL94382.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
rhodanese-related sulfurtransferase rbh
SCNpilot_expt_500_p_scaffold_201_23
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23092..23685)
DNA (594bp) protein (198aa)
NTP pyrophosphohydrolase n=1 Tax=Rhodanobacter denitrificans RepID=I4WPR0_9GAMM rbh
NUDIX hydrolase {ECO:0000313|EMBL:AIF48909.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
NTP pyrophosphohydrolase
SCNpilot_expt_500_p_scaffold_201_24
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23682..23906)
DNA (225bp) protein (75aa)
Nudix hydrolase family transmembrane protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WPR1_9GAMM
nudix hydrolase family transmembrane protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_500_p_scaffold_201_25
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23912..24721)
DNA (810bp) protein (270aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU003915, ECO:0000256|RuleBase:RU004231}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU003915};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Peptidyl-prolyl cis-trans isomerase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WB08_9GAMM rbh
FKBP-type peptidyl-prolyl cis-trans isomerase
SCNpilot_expt_500_p_scaffold_201_26
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24808..25590
DNA (783bp) protein (261aa)
3-hydroxybutyryl-CoA dehydratase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W412_9GAMM rbh
3-hydroxybutyryl-CoA dehydratase {ECO:0000313|EMBL:EIL94203.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
enoyl-CoA hydratase/carnithine racemase rbh
SCNpilot_expt_500_p_scaffold_201_27
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26062..26985)
DNA (924bp) protein (308aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4WAN9_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIL96530.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
hypothetical protein rbh
SCNpilot_expt_500_p_scaffold_201_28
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27098..28924)
DNA (1827bp) protein (609aa)
DNA mismatch repair protein MutL n=1 Tax=Rhodanobacter sp. 115 RepID=I4WAN8_9GAMM rbh
DNA mismatch repair protein MutL {ECO:0000256|HAMAP-Rule:MF_00149, ECO:0000256|SAAS:SAAS00058680}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
DNA mismatch repair protein MutL rbh
SCNpilot_expt_500_p_scaffold_201_29
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28973..30529)
DNA (1557bp) protein (519aa)
N-acetylmuramoyl-L-alanine amidase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WB12_9GAMM
N-acetylmuramoyl-L-alanine amidase {ECO:0000313|EMBL:EIL96653.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
N-acetylmuramoyl-L-alanine amidase
SCNpilot_expt_500_p_scaffold_201_30
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30715..31176)
DNA (462bp) protein (154aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI00030CC805
ATP-binding protein {ECO:0000313|EMBL:AIF48916.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
ATPase, YjeE family
Displaying items 1-30 of 176 in total

View Taxonomy