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SCNpilot_expt_500_p_scaffold_244

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Displaying items 1-30 of 128 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_244_1
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..517)
DNA (516bp) protein (172aa)
Putative cointegrase resolution protein n=2 Tax=Rhodanobacter RepID=I4WWN1_9GAMM
Putative cointegrase resolution protein {ECO:0000313|EMBL:EIL90322.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
Plasmid replication region DNA-binding N-term
SCNpilot_expt_500_p_scaffold_244_2
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

796..1959
DNA (1164bp) protein (388aa)
Phage integrase n=1 Tax=Rhodanobacter denitrificans RepID=I4WWN0_9GAMM rbh
site-specific recombinase XerD rbh
Site-specific recombinase XerD {ECO:0000313|EMBL:AGG88839.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_p_scaffold_244_3
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1956..2264
DNA (309bp) protein (103aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NDK5_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG88840.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_p_scaffold_244_4
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2381..3955)
DNA (1575bp) protein (525aa)
PMT family glycosyltransferase, 4-amino-4-deoxy-L-arabinose transferase n=1 Tax=Rhodanobacter denitrificans RepID=M4NEH5_9GAMM rbh
PMT family glycosyltransferase, 4-amino-4-deoxy-L-arabinose transferase rbh
PMT family glycosyltransferase, 4-amino-4-deoxy-L-arabinose transferase {ECO:0000313|EMBL:AGG89169.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_p_scaffold_244_5
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4049..4450)
DNA (402bp) protein (134aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WWN4_9GAMM
hypothetical protein
Putative membrane protein {ECO:0000313|EMBL:AGG89167.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_p_scaffold_244_6
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4542..5723)
DNA (1182bp) protein (394aa)
Major facilitator transporter n=1 Tax=Rhodanobacter denitrificans RepID=I4WWN5_9GAMM rbh
Major Facilitator Superfamily transporter rbh
Major Facilitator Superfamily transporter {ECO:0000313|EMBL:AGG89166.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_p_scaffold_244_7
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5808..7058)
DNA (1251bp) protein (417aa)
Signal transduction histidine kinase n=1 Tax=Rhodanobacter denitrificans RepID=M4NED1_9GAMM rbh
signal transduction histidine kinase rbh
Signal transduction histidine kinase {ECO:0000313|EMBL:AGG89165.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_p_scaffold_244_8
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7042..7722)
DNA (681bp) protein (227aa)
DNA-binding response regulator ColR n=1 Tax=Rhodanobacter denitrificans RepID=I4WWN7_9GAMM rbh
response regulator with CheY-like receiver domain and winged-helix DNA-binding domain rbh
Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain {ECO:0000313|EMBL:AGG89164.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_p_scaffold_244_9
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7728..10862)
DNA (3135bp) protein (1045aa)
Multidrug ABC transporter n=1 Tax=Rhodanobacter denitrificans RepID=I4WWN8_9GAMM rbh
Heavy metal efflux pump, cobalt-zinc-cadmium {ECO:0000313|EMBL:AGG89163.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
heavy metal efflux pump, cobalt-zinc-cadmium rbh
SCNpilot_expt_500_p_scaffold_244_10
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10859..11911)
DNA (1053bp) protein (351aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WWN9_9GAMM rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AGG89162.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_p_scaffold_244_11
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11908..13371)
DNA (1464bp) protein (488aa)
Outer membrane efflux protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WWP0_9GAMM rbh
outer membrane protein rbh
Outer membrane protein {ECO:0000313|EMBL:AGG89161.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_p_scaffold_244_12
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13423..15141)
DNA (1719bp) protein (573aa)
PMT family glycosyltransferase, 4-amino-4-deoxy-L-arabinose transferase n=1 Tax=Rhodanobacter denitrificans RepID=M4NEC7_9GAMM rbh
PMT family glycosyltransferase, 4-amino-4-deoxy-L-arabinose transferase {ECO:0000313|EMBL:AGG89160.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
PMT family glycosyltransferase, 4-amino-4-deoxy-L-arabinose transferase rbh
SCNpilot_expt_500_p_scaffold_244_13
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15138..16163)
DNA (1026bp) protein (342aa)
Glycosyl transferase family protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WWP2_9GAMM rbh
glycosyl transferase rbh
Glycosyl transferase {ECO:0000313|EMBL:AGG89159.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_p_scaffold_244_14
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16357..16914)
DNA (558bp) protein (186aa)
Co/Zn/Cd efflux system component n=1 Tax=Rhodanobacter denitrificans RepID=I4WWR8_9GAMM
Co/Zn/Cd efflux system component
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_500_p_scaffold_244_15
Paraglaciecola polaris, Paraglaciecola, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17235..20228
DNA (2994bp) protein (998aa)
Transposase n=1 Tax=Rhodanobacter denitrificans RepID=I4WWJ9_9GAMM rbh
Transposase for transposon Tn4556 {ECO:0000313|EMBL:GAC32312.1}; TaxID=1129793 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Paraglaciecola.;" source="Paraglaciecola polaris LMG 21857.;"
transposase rbh
SCNpilot_expt_500_p_scaffold_244_16
Lysobacter arseniciresistens, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20320..21429)
DNA (1110bp) protein (370aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI000344ECB1 rbh
Type II restriction enzyme {ECO:0000313|EMBL:KGM53140.1}; TaxID=913325 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter arseniciresistens ZS79.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_244_17
unknown

Not on your lists

comp(21410..22042)
DNA (633bp) protein (211aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_244_18
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22046..23839
DNA (1794bp) protein (598aa)
copper oxidase n=1 Tax=Dyella ginsengisoli RepID=UPI000348EE6E rbh
Copper-resistance protein, CopA family protein {ECO:0000313|EMBL:EIL89957.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
copper-resistance protein, CopA family
SCNpilot_expt_500_p_scaffold_244_19
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23836..25272
DNA (1437bp) protein (479aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034CCD5B rbh
uncharacterized protein involved in copper resistance
Uncharacterized protein involved in copper resistance {ECO:0000313|EMBL:AGG88843.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_p_scaffold_244_20
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25286..26374
DNA (1089bp) protein (363aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034B9FBF rbh
Cytochrome c family protein {ECO:0000313|EMBL:EIL98576.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
ketosteroid isomerase-like enzyme
SCNpilot_expt_500_p_scaffold_244_21
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26371..26826
DNA (456bp) protein (152aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI0003451B6A rbh
putative metal-binding protein
Putative metal-binding protein {ECO:0000313|EMBL:AGG88845.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_p_scaffold_244_22
unknown

Not on your lists

27087..27527
DNA (441bp) protein (147aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI0003472C55 rbh
SCNpilot_expt_500_p_scaffold_244_23
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27603..28886
DNA (1284bp) protein (428aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00038293FB rbh
Putative outer membrane efflux protein {ECO:0000313|EMBL:EIM01183.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
outer membrane protein
SCNpilot_expt_500_p_scaffold_244_24
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28883..30385
DNA (1503bp) protein (501aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034DF473 rbh
Cobalt/zinc/cadmium efflux RND transporter,membrane fusion protein, CzcB family {ECO:0000313|EMBL:EIL94374.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
RND family efflux transporter, MFP subunit
SCNpilot_expt_500_p_scaffold_244_25
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30382..32946
DNA (2565bp) protein (855aa)
cation transporter n=1 Tax=Dyella ginsengisoli RepID=UPI00034C0FD6
Cobalt-zinc-cadmium resistance protein CzcA Cation efflux system protein CusA {ECO:0000313|EMBL:EIM00604.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
heavy metal efflux pump, cobalt-zinc-cadmium
SCNpilot_expt_500_p_scaffold_244_26
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32888..33538
DNA (651bp) protein (217aa)
cation transporter n=1 Tax=Dyella ginsengisoli RepID=UPI00034C0FD6
heavy metal efflux pump, cobalt-zinc-cadmium
Heavy metal efflux pump, cobalt-zinc-cadmium {ECO:0000313|EMBL:AGG88851.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_p_scaffold_244_27
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33535..33885
DNA (351bp) protein (117aa)
Copper binding periplasmic protein CusF n=1 Tax=Rhodanobacter denitrificans RepID=I4WWL8_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG88852.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_p_scaffold_244_28
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34016..34357
DNA (342bp) protein (114aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WNZ5_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIM01187.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
SCNpilot_expt_500_p_scaffold_244_29
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34492..34950)
DNA (459bp) protein (153aa)
Hg(Ii)-responsive transcriptional regulator n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WNZ6_9GAMM
Hg(Ii)-responsive transcriptional regulator {ECO:0000313|EMBL:EIM01188.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Hg(II)-responsive transcriptional regulator
SCNpilot_expt_500_p_scaffold_244_30
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35679..36068
DNA (390bp) protein (130aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4W3X7_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL94168.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
Displaying items 1-30 of 128 in total

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