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SCNpilot_expt_500_p_scaffold_280

Search features with annotation key words

Displaying items 1-30 of 196 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_280_1
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(135..1082)
DNA (948bp) protein (316aa)
Methionyl-tRNA formyltransferase {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00043681}; EC=2.1.2.9 {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00150580};; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
Methionyl-tRNA formyltransferase n=1 Tax=Rhodanobacter sp. 115 RepID=I4VX46_9GAMM rbh
methionyl-tRNA formyltransferase
SCNpilot_expt_500_p_scaffold_280_2
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1079..1597)
DNA (519bp) protein (173aa)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
peptide deformylase (EC:3.5.1.88)
Peptide deformylase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WGN0_9GAMM
SCNpilot_expt_500_p_scaffold_280_3
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1725..2849
DNA (1125bp) protein (375aa)
LysM domain-containing protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4VX44_9GAMM rbh
LysM domain-containing protein {ECO:0000313|EMBL:EIL91785.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
LysM domain-containing protein rbh
SCNpilot_expt_500_p_scaffold_280_4
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2932..4062
DNA (1131bp) protein (377aa)
DNA protecting protein DprA n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WGM8_9GAMM rbh
DNA protecting protein DprA {ECO:0000313|EMBL:EIL98619.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
DNA protecting protein DprA rbh
SCNpilot_expt_500_p_scaffold_280_5
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4199..6688
DNA (2490bp) protein (830aa)
DNA topoisomerase 1 {ECO:0000256|HAMAP-Rule:MF_00952}; EC=5.99.1.2 {ECO:0000256|HAMAP-Rule:MF_00952};; DNA topoisomerase I {ECO:0000256|HAMAP-Rule:MF_00952}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
DNA topoisomerase I n=1 Tax=Dyella ginsengisoli RepID=UPI0003487771 rbh
DNA topoisomerase I, bacterial
SCNpilot_expt_500_p_scaffold_280_6
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6688..7260
DNA (573bp) protein (191aa)
Threonylcarbamoyl-AMP synthase {ECO:0000256|HAMAP-Rule:MF_01852, ECO:0000256|SAAS:SAAS00012127}; Short=TC-AMP synthase {ECO:0000256|HAMAP-Rule:MF_01852};; EC=2.7.7.87 {ECO:0000256|HAMAP-Rule:MF_01852, ECO:0000256|SAAS:SAAS00012122};; L-threonylcarbamoyladenylate synthase {ECO:0000256|HAMAP-Rule:MF_01852}; t(6)A37 threonylcarbamoyladenosine biosynthesis protein TsaC {ECO:0000256|HAMAP-Rule:MF_01852}; tRNA threonylcarbamoyladenosine biosynthesis protein TsaC {ECO:0000256|HAMAP-Rule:MF_01852}; Flags: Precursor
Threonylcarbamoyl-AMP synthase n=1 Tax=Rhodanobacter denitrificans RepID=M4NIL5_9GAMM
putative translation factor (SUA5)
SCNpilot_expt_500_p_scaffold_280_7
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7560..8966
DNA (1407bp) protein (469aa)
AMP-ligase n=1 Tax=Rhodanobacter sp. 115 RepID=I4WDQ9_9GAMM rbh
AMP-ligase {ECO:0000313|EMBL:EIL97600.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
acyl-CoA synthetase/AMP-acid ligase
SCNpilot_expt_500_p_scaffold_280_8
Terriglobus saanensis, Terriglobus, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(9006..10163)
DNA (1158bp) protein (386aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 89 RepID=UPI000374DA94 rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ADV81149.1}; TaxID=401053 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Terriglobus.;" source="Terriglobus saanensis (strain ATCC BAA-1853 / DSM 23119 / SP1PR4).;"
SCNpilot_expt_500_p_scaffold_280_9
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10323..11603
DNA (1281bp) protein (427aa)
Phosphoribosylamine--glycine ligase {ECO:0000256|HAMAP-Rule:MF_00138}; EC=6.3.4.13 {ECO:0000256|HAMAP-Rule:MF_00138};; GARS {ECO:0000256|HAMAP-Rule:MF_00138}; Glycinamide ribonucleotide synthetase {ECO:0000256|HAMAP-Rule:MF_00138}; Phosphoribosylglycinamide synthetase {ECO:0000256|HAMAP-Rule:MF_00138}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
Phosphoribosylamine--glycine ligase n=1 Tax=Rhodanobacter sp. 115 RepID=I4WDQ8_9GAMM rbh
phosphoribosylamine--glycine ligase
SCNpilot_expt_500_p_scaffold_280_10
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12095..13741)
DNA (1647bp) protein (549aa)
Phosphoglucomutase {ECO:0000313|EMBL:EIL90873.1}; EC=5.4.2.2 {ECO:0000313|EMBL:EIL90873.1};; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
Phosphoglucomutase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VUI2_9GAMM
phosphoglucomutase, alpha-D-glucose phosphate-specific
SCNpilot_expt_500_p_scaffold_280_11
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13738..15405)
DNA (1668bp) protein (556aa)
Glucose-6-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00473, ECO:0000256|RuleBase:RU000612}; Short=GPI {ECO:0000256|HAMAP-Rule:MF_00473};; EC=5.3.1.9 {ECO:0000256|HAMAP-Rule:MF_00473, ECO:0000256|RuleBase:RU000612};; Phosphoglucose isomerase {ECO:0000256|HAMAP-Rule:MF_00473}; Phosphohexose isomerase {ECO:0000256|HAMAP-Rule:MF_00473}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Glucose-6-phosphate isomerase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WAH7_9GAMM rbh
glucose-6-phosphate isomerase rbh
SCNpilot_expt_500_p_scaffold_280_12
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15402..16505)
DNA (1104bp) protein (368aa)
transaldolase (EC:2.2.1.2) rbh
Transaldolase {ECO:0000256|HAMAP-Rule:MF_00493, ECO:0000256|SAAS:SAAS00118670}; EC=2.2.1.2 {ECO:0000256|HAMAP-Rule:MF_00493, ECO:0000256|SAAS:SAAS00118670};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Transaldolase n=1 Tax=Rhodanobacter denitrificans RepID=M4NMT8_9GAMM rbh
SCNpilot_expt_500_p_scaffold_280_13
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16538..17245)
DNA (708bp) protein (236aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WND9_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG90957.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_p_scaffold_280_14
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17239..18642)
DNA (1404bp) protein (468aa)
Glucose-6-phosphate 1-dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00966, ECO:0000256|RuleBase:RU000497}; Short=G6PD {ECO:0000256|HAMAP-Rule:MF_00966};; EC=1.1.1.49 {ECO:0000256|HAMAP-Rule:MF_00966, ECO:0000256|RuleBase:RU000497};; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
glucose-6-phosphate 1-dehydrogenase (EC:1.1.1.49) rbh
Glucose-6-phosphate 1-dehydrogenase n=1 Tax=Rhodanobacter denitrificans RepID=I4WNE0_9GAMM rbh
SCNpilot_expt_500_p_scaffold_280_15
Massilia sp. JS1662, Massilia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18881..19225)
DNA (345bp) protein (115aa)
Uncharacterized protein n=1 Tax=Pseudomonas stutzeri MF28 RepID=U3HVN8_PSEST
Uncharacterized protein {ECO:0000313|EMBL:KGF83322.1}; TaxID=1519190 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Massilia sp. JS1662.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_280_16
Arthrobacter nitrophenolicus, Arthrobacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19338..19724)
DNA (387bp) protein (129aa)
epimerase n=1 Tax=Pseudomonas pelagia RepID=UPI0003A0989D
Uncharacterized protein {ECO:0000313|EMBL:ELT44589.1}; TaxID=683150 species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Arthrobacter.;" source="Arthrobacter nitrophenolicus.;"
hypothetical protein; K08987 putative membrane protein
SCNpilot_expt_500_p_scaffold_280_17
RIFOXYA1_FULL_Xanthomonadales_68_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19784..20530)
DNA (747bp) protein (249aa)
map; methionine aminopeptidase; K01265 methionyl aminopeptidase [EC:3.4.11.18] rbh
methionine aminopeptidase n=1 Tax=Singularimonas variicoloris RepID=UPI0003756394 rbh
Tax=RIFOXYA1_FULL_Xanthomonadales_68_6_curated
SCNpilot_expt_500_p_scaffold_280_18
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20898..21251)
DNA (354bp) protein (118aa)
Uncharacterized protein n=1 Tax=Comamonas testosteroni KF-1 RepID=B7WUE5_COMTE
Uncharacterized protein {ECO:0000313|EMBL:EED65629.1}; Flags: Precursor;; TaxID=399795 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni KF-1.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_280_19
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21495..30098)
DNA (8604bp) protein (2868aa)
Cellobiose phosphorylase n=1 Tax=Rhodanobacter denitrificans RepID=M4NMQ6_9GAMM rbh
Cellobiose phosphorylase {ECO:0000313|EMBL:AGG90923.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
cellobiose phosphorylase rbh
SCNpilot_expt_500_p_scaffold_280_20
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30256..30705
DNA (450bp) protein (150aa)
N-acetyltransferase GCN5 n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VPP7_9GAMM
N-acetyltransferase GCN5 {ECO:0000313|EMBL:EIL89188.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
acetyltransferase
SCNpilot_expt_500_p_scaffold_280_21
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30719..32296)
DNA (1578bp) protein (526aa)
Response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VPP6_9GAMM
Response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) {ECO:0000313|EMBL:EIL89187.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein
SCNpilot_expt_500_p_scaffold_280_22
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32300..33301)
DNA (1002bp) protein (334aa)
Response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WBZ8_9GAMM
Diguanylate cyclase {ECO:0000313|EMBL:AHX15370.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein
SCNpilot_expt_500_p_scaffold_280_23
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33356..34489)
DNA (1134bp) protein (378aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VPP5_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIL89186.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein rbh
SCNpilot_expt_500_p_scaffold_280_24
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34574..35950
DNA (1377bp) protein (459aa)
Acetyl-CoA acetyltransferase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VKU8_9GAMM
acetyl-CoA acetyltransferase
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_500_p_scaffold_280_25
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

36018..36572
DNA (555bp) protein (185aa)
TonB family protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NMQ0_9GAMM
TonB family protein
TonB family protein {ECO:0000313|EMBL:AGG90918.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_p_scaffold_280_26
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(36632..36856)
DNA (225bp) protein (75aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WY32_9GAMM
hypothetical protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_500_p_scaffold_280_27
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(36950..37600)
DNA (651bp) protein (217aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4W7Y1_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIL95572.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_280_28
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

37743..38486
DNA (744bp) protein (248aa)
phosphoglycerate mutase (EC:5.4.2.1) rbh
2,3-bisphosphoglycerate-dependent phosphoglycerate mutase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WF95_9GAMM rbh
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_500_p_scaffold_280_29
Streptomyces sp. CNQ-509, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

38815..39825
DNA (1011bp) protein (337aa)
hypothetical protein n=1 Tax=Singularimonas variicoloris RepID=UPI0003782DDE
Transcriptional regulator TrmB {ECO:0000313|EMBL:AKH81192.1}; TaxID=444103 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. CNQ-509.;"
putative LuxR family transcriptional regulator
SCNpilot_expt_500_p_scaffold_280_30
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

40062..42404
DNA (2343bp) protein (781aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI00031B6116 rbh
Uncharacterized protein {ECO:0000313|EMBL:AIF45785.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
Peptidase S53 propeptide rbh
Displaying items 1-30 of 196 in total

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