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SCNpilot_expt_500_p_scaffold_421

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Displaying items 1-30 of 50 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_421_1
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(291..494)
DNA (204bp) protein (68aa)
Carbon storage regulator homolog n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W444_9GAMM
carbon storage regulator CsrA
Carbon storage regulator homolog {ECO:0000256|HAMAP-Rule:MF_00167, ECO:0000256|SAAS:SAAS00093889}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
SCNpilot_expt_500_p_scaffold_421_2
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(760..3399)
DNA (2640bp) protein (880aa)
Alanine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015689}; EC=6.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015673};; Alanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00036}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
alanyl-tRNA synthetase (EC:6.1.1.7) rbh
Alanine--tRNA ligase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W445_9GAMM rbh
SCNpilot_expt_500_p_scaffold_421_3
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3463..3981)
DNA (519bp) protein (173aa)
Regulatory protein RecX n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W446_9GAMM
Regulatory protein RecX {ECO:0000256|HAMAP-Rule:MF_01114, ECO:0000256|SAAS:SAAS00093789}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_421_4
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4089..4637)
DNA (549bp) protein (183aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034D2A17
Uncharacterized protein {ECO:0000313|EMBL:AHX12589.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
beta-lactamase hydrolase-like protein
SCNpilot_expt_500_p_scaffold_421_5
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(4703..5740)
DNA (1038bp) protein (346aa)
recombinase RecA n=1 Tax=Dyella japonica RepID=UPI00031954A7 rbh
Protein RecA {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; Recombinase A {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
protein RecA
SCNpilot_expt_500_p_scaffold_421_6
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5856..6365)
DNA (510bp) protein (170aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WUG3_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIM03105.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
competence/damage-inducible protein CinA-like protein
SCNpilot_expt_500_p_scaffold_421_7
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6440..9013
DNA (2574bp) protein (858aa)
DNA mismatch repair protein MutS n=1 Tax=Rhodanobacter sp. 115 RepID=I4W258_9GAMM rbh
DNA mismatch repair protein MutS {ECO:0000256|HAMAP-Rule:MF_00096, ECO:0000256|SAAS:SAAS00184333}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
DNA mismatch repair protein MutS
SCNpilot_expt_500_p_scaffold_421_8
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9005..9613)
DNA (609bp) protein (203aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034CA753
Response regulator receiver {ECO:0000313|EMBL:EIL94243.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
response regulator with CheY-like receiver domain and winged-helix DNA-binding domain
SCNpilot_expt_500_p_scaffold_421_9
RBG_16_Caldithrix_48_16_curated, Caldithrix, Bacteria

Not on your lists

comp(9705..10289)
DNA (585bp) protein (195aa)
riboflavin biosynthesis protein ribD (EC:1.1.1.193) id=1245029 bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
riboflavin biosynthesis protein ribD (EC:1.1.1.193)
Tax=RBG_16_Caldithrix_48_16_curated
SCNpilot_expt_500_p_scaffold_421_10
Burkholderia phytofirmans, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10312..10947)
DNA (636bp) protein (212aa)
glutathione S-transferase domain; K00799 glutathione S-transferase [EC:2.5.1.18]
Glutathione S-transferase domain n=1 Tax=Burkholderia phytofirmans (strain DSM 17436 / PsJN) RepID=B2TBN9_BURPP
Glutathione S-transferase domain {ECO:0000313|EMBL:ACD19691.1}; TaxID=398527 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia phytofirmans (strain DSM 17436 / PsJN).;"
SCNpilot_expt_500_p_scaffold_421_11
Roseobacter sp. SK209-2-6, Roseobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11057..11647
DNA (591bp) protein (197aa)
Transcriptional regulator n=1 Tax=Roseobacter sp. SK209-2-6 RepID=A4EZY6_9RHOB
Transcriptional regulator {ECO:0000313|EMBL:EBA14803.1}; TaxID=388739 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseobacter.;" source="Roseobacter sp. SK209-2-6.;"
TetR family transcriptional regulator
SCNpilot_expt_500_p_scaffold_421_12
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12135..15305
DNA (3171bp) protein (1057aa)
Outer membrane receptor for ferrienterochelin and colicins n=1 Tax=Rhodanobacter sp. 115 RepID=I4VP79_9GAMM
Outer membrane receptor for ferrienterochelin and colicins {ECO:0000313|EMBL:EIL89020.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
outer membrane receptor protein
SCNpilot_expt_500_p_scaffold_421_13
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15457..16002)
DNA (546bp) protein (182aa)
Response regulator receiver protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4W255_9GAMM
Response regulator receiver protein {ECO:0000313|EMBL:EIL93546.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
response regulator with CheY-like receiver domain and winged-helix DNA-binding domain
SCNpilot_expt_500_p_scaffold_421_14
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16124..16498)
DNA (375bp) protein (125aa)
Ribosome-associated heat shock protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WY96_9GAMM
ribosome-associated heat shock protein implicated in recycling of 50S subunit
Heat shock protein 15 {ECO:0000256|PIRNR:PIRNR016821}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_p_scaffold_421_15
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16671..17576)
DNA (906bp) protein (302aa)
Putative permease n=1 Tax=Rhodanobacter sp. 115 RepID=I4W253_9GAMM rbh
Putative permease {ECO:0000313|EMBL:EIL93544.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
putative permease
SCNpilot_expt_500_p_scaffold_421_16
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17695..17997
DNA (303bp) protein (101aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W0B5_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL92906.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_421_17
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18098..18670
DNA (573bp) protein (191aa)
3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (EC:2.5.1.54)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W3M6_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL94067.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
SCNpilot_expt_500_p_scaffold_421_18
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18743..20611)
DNA (1869bp) protein (623aa)
Chaperone protein HtpG n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WUD7_9GAMM
Chaperone protein HtpG {ECO:0000256|HAMAP-Rule:MF_00505, ECO:0000256|SAAS:SAAS00218406}; Heat shock protein HtpG {ECO:0000256|HAMAP-Rule:MF_00505}; High temperature protein G {ECO:0000256|HAMAP-Rule:MF_00505}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
molecular chaperone of HSP90 family
SCNpilot_expt_500_p_scaffold_421_19
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20714..21616)
DNA (903bp) protein (301aa)
Protease HtpX {ECO:0000256|HAMAP-Rule:MF_00188}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_00188};; Heat shock protein HtpX {ECO:0000256|HAMAP-Rule:MF_00188}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
Protease HtpX n=1 Tax=Rhodanobacter sp. 115 RepID=I4W938_9GAMM rbh
Heat shock protein rbh
SCNpilot_expt_500_p_scaffold_421_20
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21744..22610
DNA (867bp) protein (289aa)
Glutamyl-Q tRNA(Asp) synthetase {ECO:0000256|HAMAP-Rule:MF_01428, ECO:0000256|SAAS:SAAS00018238}; Short=Glu-Q-RSs {ECO:0000256|HAMAP-Rule:MF_01428};; EC=6.1.1.- {ECO:0000256|HAMAP-Rule:MF_01428, ECO:0000256|SAAS:SAAS00018222};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Glutamyl-Q tRNA(Asp) synthetase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WUD5_9GAMM rbh
glutamyl-queuosine tRNA(Asp) synthetase rbh
SCNpilot_expt_500_p_scaffold_421_21
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22774..23514
DNA (741bp) protein (247aa)
3-oxoacyl-(acyl-carrier-protein) reductase (EC:1.1.1.36 1.1.1.100) rbh
Acetoacetyl-CoA reductase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WUD4_9GAMM rbh
Acetoacetyl-CoA reductase {ECO:0000313|EMBL:EIM03076.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
SCNpilot_expt_500_p_scaffold_421_22
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23635..25011
DNA (1377bp) protein (459aa)
PAS and GAF sensor-containing diguanylate cyclase n=1 Tax=Rhodanobacter sp. 115 RepID=I4W559_9GAMM
Diguanylate cyclase {ECO:0000313|EMBL:AHX15487.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein
SCNpilot_expt_500_p_scaffold_421_23
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25018..25818)
DNA (801bp) protein (267aa)
Dinucleotide-utilizing protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W3P1_9GAMM
Dinucleotide-utilizing protein {ECO:0000313|EMBL:EIL94082.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
dinucleotide-utilizing enzyme possibly involved in molybdopterin or thiamin biosynthesis
SCNpilot_expt_500_p_scaffold_421_24
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25947..26336
DNA (390bp) protein (130aa)
Cytochrome C n=1 Tax=Rhodanobacter denitrificans RepID=I4WY76_9GAMM
cytochrome c556
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_500_p_scaffold_421_25
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26349..26651)
DNA (303bp) protein (101aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4W944_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL94084.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_421_26
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26662..27534)
DNA (873bp) protein (291aa)
Pirin-related protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NJ77_9GAMM rbh
Pirin-related protein rbh
Pirin-related protein {ECO:0000313|EMBL:AGG89743.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_p_scaffold_421_27
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27548..28606)
DNA (1059bp) protein (353aa)
NADH:flavin oxidoreductase n=1 Tax=Rhodanobacter denitrificans RepID=M4NFT0_9GAMM
NADH:flavin oxidoreductase
NADH:flavin oxidoreductase {ECO:0000313|EMBL:AGG89744.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_p_scaffold_421_28
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28840..29049)
DNA (210bp) protein (70aa)
Cold shock protein n=2 Tax=Rhodanobacter RepID=I4WY71_9GAMM
cold shock protein
Cold shock protein {ECO:0000313|EMBL:EIM03068.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
SCNpilot_expt_500_p_scaffold_421_29
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29391..29600)
DNA (210bp) protein (70aa)
Cold shock protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WY70_9GAMM
cold shock protein
Cold shock protein {ECO:0000313|EMBL:AGG89747.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_p_scaffold_421_30
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29850..30212
DNA (363bp) protein (121aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WY69_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:AHX12558.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
hypothetical protein
Displaying items 1-30 of 50 in total

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