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SCNpilot_expt_500_p_scaffold_556

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Displaying items 1-30 of 39 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_556_1
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..515
DNA (513bp) protein (171aa)
ATP synthase subunit alpha {ECO:0000256|HAMAP-Rule:MF_01346}; EC=3.6.3.14 {ECO:0000256|HAMAP-Rule:MF_01346};; ATP synthase F1 sector subunit alpha {ECO:0000256|HAMAP-Rule:MF_01346}; F-ATPase subunit alpha {ECO:0000256|HAMAP-Rule:MF_01346}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
F0F1 ATP synthase subunit alpha n=1 Tax=Dyella japonica RepID=UPI00031D5669
proton translocating ATP synthase, F1 alpha subunit
SCNpilot_expt_500_p_scaffold_556_2
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

616..1398
DNA (783bp) protein (261aa)
ATP synthase gamma chain n=1 Tax=Rhodanobacter sp. 115 RepID=I4VIF9_9GAMM
ATP synthase gamma chain {ECO:0000256|HAMAP-Rule:MF_00815}; ATP synthase F1 sector gamma subunit {ECO:0000256|HAMAP-Rule:MF_00815}; F-ATPase gamma subunit {ECO:0000256|HAMAP-Rule:MF_00815}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
ATP synthase F1 subcomplex gamma subunit
SCNpilot_expt_500_p_scaffold_556_3
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1481..2914
DNA (1434bp) protein (478aa)
ATP synthase subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; EC=3.6.3.14 {ECO:0000256|HAMAP-Rule:MF_01347};; ATP synthase F1 sector subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; F-ATPase subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
ATP synthase subunit beta n=1 Tax=Rhodanobacter sp. 115 RepID=I4VIG0_9GAMM rbh
ATP synthase, F1 beta subunit
SCNpilot_expt_500_p_scaffold_556_4
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3016..3438
DNA (423bp) protein (141aa)
ATP synthase epsilon chain n=1 Tax=Rhodanobacter sp. 115 RepID=I4VIG1_9GAMM
ATP synthase epsilon chain {ECO:0000256|HAMAP-Rule:MF_00530}; ATP synthase F1 sector epsilon subunit {ECO:0000256|HAMAP-Rule:MF_00530}; F-ATPase epsilon subunit {ECO:0000256|HAMAP-Rule:MF_00530}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
ATP synthase, F1 epsilon subunit
SCNpilot_expt_500_p_scaffold_556_5
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3655..4194
DNA (540bp) protein (180aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NTL0_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG90831.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_p_scaffold_556_6
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4294..5667
DNA (1374bp) protein (458aa)
UDP-N-acetylglucosamine pyrophosphorylase (EC:2.7.7.23 2.3.1.157)
Bifunctional protein GlmU n=1 Tax=Rhodanobacter denitrificans RepID=M4NIQ6_9GAMM
Bifunctional protein GlmU {ECO:0000256|HAMAP-Rule:MF_01631, ECO:0000256|SAAS:SAAS00083647}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_p_scaffold_556_7
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5681..6703)
DNA (1023bp) protein (341aa)
Pteridine-dependent deoxygenase like protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4WB29_9GAMM rbh
Pteridine-dependent deoxygenase like protein {ECO:0000313|EMBL:EIL96670.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_556_8
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6763..7035
DNA (273bp) protein (91aa)
Acyl carrier protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NMF4_9GAMM
acyl carrier protein
Acyl carrier protein {ECO:0000313|EMBL:AGG90828.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_p_scaffold_556_9
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7051..8004
DNA (954bp) protein (318aa)
Acyltransferase n=1 Tax=Rhodanobacter denitrificans RepID=I4WMW5_9GAMM rbh
putative acyltransferase rbh
Putative acyltransferase {ECO:0000313|EMBL:AGG90825.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_p_scaffold_556_10
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8015..8779)
DNA (765bp) protein (255aa)
Glycosyl transferase family protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WMV9_9GAMM
glycosyl transferase
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_500_p_scaffold_556_11
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8803..9594)
DNA (792bp) protein (264aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WMV8_9GAMM
beta-ketoacyl synthase family protein
Beta-ketoacyl synthase family protein {ECO:0000313|EMBL:AGG90818.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_p_scaffold_556_12
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9591..10787)
DNA (1197bp) protein (399aa)
3-oxoacyl-(Acyl carrier protein) synthase I n=1 Tax=Rhodanobacter denitrificans RepID=I4WMV7_9GAMM
3-oxoacyl-(acyl-carrier-protein) synthase
3-oxoacyl-(Acyl-carrier-protein) synthase {ECO:0000313|EMBL:AGG90817.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_p_scaffold_556_13
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10960..11862
DNA (903bp) protein (301aa)
coproporphyrinogen III oxidase (EC:1.3.3.3)
Oxygen-dependent coproporphyrinogen-III oxidase {ECO:0000256|HAMAP-Rule:MF_00333}; Short=CPO {ECO:0000256|HAMAP-Rule:MF_00333};; Short=Coprogen oxidase {ECO:0000256|HAMAP-Rule:MF_00333};; Short=Coproporphyrinogenase {ECO:0000256|HAMAP-Rule:MF_00333};; EC=1.3.3.3 {ECO:0000256|HAMAP-Rule:MF_00333};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Coproporphyrinogen-III oxidase, aerobic n=1 Tax=Rhodanobacter denitrificans RepID=M4NIT1_9GAMM
SCNpilot_expt_500_p_scaffold_556_14
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11881..13770)
DNA (1890bp) protein (630aa)
Phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase n=2 Tax=Rhodanobacter sp. 115 RepID=I4VHU5_9GAMM rbh
Phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase {ECO:0000313|EMBL:EIL86786.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthase
SCNpilot_expt_500_p_scaffold_556_15
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13878..14351)
DNA (474bp) protein (158aa)
Phosphohistidine phosphatase SixA n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WBZ3_9GAMM
Phosphohistidine phosphatase SixA {ECO:0000313|EMBL:EIL96984.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
phosphohistidine phosphatase SixA
SCNpilot_expt_500_p_scaffold_556_16
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14389..15024)
DNA (636bp) protein (212aa)
Partition protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VKV2_9GAMM rbh
Partition protein {ECO:0000313|EMBL:EIL87843.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
ATPase involved in chromosome partitioning
SCNpilot_expt_500_p_scaffold_556_17
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15074..16111)
DNA (1038bp) protein (346aa)
Uncharacterized protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VKV3_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL87844.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_556_18
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16275..16469
DNA (195bp) protein (65aa)
NusB antitermination factor n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VPN8_9GAMM
NusB antitermination factor {ECO:0000313|EMBL:EIL89179.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_556_19
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16515..17369)
DNA (855bp) protein (285aa)
spermidine synthase (EC:2.5.1.16)
Spermidine synthase n=1 Tax=Rhodanobacter denitrificans RepID=I4WGX3_9GAMM
Polyamine aminopropyltransferase {ECO:0000256|HAMAP-Rule:MF_00198}; Putrescine aminopropyltransferase {ECO:0000256|HAMAP-Rule:MF_00198}; Spermidine synthase {ECO:0000256|HAMAP-Rule:MF_00198}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_p_scaffold_556_20
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17576..19462
DNA (1887bp) protein (629aa)
Biosynthetic arginine decarboxylase {ECO:0000256|HAMAP-Rule:MF_01417}; Short=ADC {ECO:0000256|HAMAP-Rule:MF_01417};; EC=4.1.1.19 {ECO:0000256|HAMAP-Rule:MF_01417, ECO:0000256|SAAS:SAAS00212226};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
arginine decarboxylase (EC:4.1.1.19) rbh
Biosynthetic arginine decarboxylase n=1 Tax=Rhodanobacter denitrificans RepID=I4WGX2_9GAMM rbh
SCNpilot_expt_500_p_scaffold_556_21
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19577..20362
DNA (786bp) protein (262aa)
3-hydroxybutyrate dehydrogenase {ECO:0000313|EMBL:AIF46275.1}; EC=1.1.1.30 {ECO:0000313|EMBL:AIF46275.1};; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
3-hydroxybutyrate dehydrogenase n=1 Tax=Dyella japonica RepID=UPI0002D26F82 rbh
3-hydroxybutyrate dehydrogenase
SCNpilot_expt_500_p_scaffold_556_22
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20439..21182
DNA (744bp) protein (248aa)
Probable acetoacetate decarboxylase {ECO:0000256|HAMAP-Rule:MF_00597}; Short=AAD {ECO:0000256|HAMAP-Rule:MF_00597};; Short=ADC {ECO:0000256|HAMAP-Rule:MF_00597};; EC=4.1.1.4 {ECO:0000256|HAMAP-Rule:MF_00597};; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
acetoacetate decarboxylase (EC:4.1.1.4); K01574 acetoacetate decarboxylase [EC:4.1.1.4]
acetoacetate decarboxylase n=1 Tax=Dyella japonica RepID=UPI0003116042 rbh
SCNpilot_expt_500_p_scaffold_556_23
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21187..22380
DNA (1194bp) protein (398aa)
Uncharacterized protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VKV8_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL87849.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
hypothetical protein; K07001 NTE family protein rbh
SCNpilot_expt_500_p_scaffold_556_24
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22417..23169)
DNA (753bp) protein (251aa)
Oxidoreductase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WBY5_9GAMM
Oxidoreductase {ECO:0000313|EMBL:EIL96976.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
short-chain alcohol dehydrogenase
SCNpilot_expt_500_p_scaffold_556_25
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23195..23899)
DNA (705bp) protein (235aa)
Cell division protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WBY4_9GAMM
Cell division protein {ECO:0000313|EMBL:EIL96975.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
cell division protein
SCNpilot_expt_500_p_scaffold_556_26
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(23899..25611)
DNA (1713bp) protein (571aa)
Arginine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00123}; EC=6.1.1.19 {ECO:0000256|HAMAP-Rule:MF_00123};; Arginyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00123}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
arginyl-tRNA synthetase (EC:6.1.1.19) rbh
arginyl-tRNA synthetase n=1 Tax=Dyella ginsengisoli RepID=UPI00034B4EE6 rbh
SCNpilot_expt_500_p_scaffold_556_27
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26151..26822)
DNA (672bp) protein (224aa)
DNA repair protein radc n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VKW2_9GAMM
DNA repair protein radc {ECO:0000313|EMBL:EIL87853.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
DNA repair protein
SCNpilot_expt_500_p_scaffold_556_28
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26922..28127
DNA (1206bp) protein (402aa)
Bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase {ECO:0000313|EMBL:EIL96972.1}; EC=6.3.2.5 {ECO:0000313|EMBL:EIL96972.1};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase (EC:4.1.1.36 6.3.2.5) rbh
Bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WBY1_9GAMM rbh
SCNpilot_expt_500_p_scaffold_556_29
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28124..28591
DNA (468bp) protein (156aa)
deoxyuridine 5'-triphosphate nucleotidohydrolase Dut (EC:3.6.1.23)
deoxyuridine 5''''-triphosphate nucleotidohydrolase n=1 Tax=Dyella ginsengisoli RepID=UPI000344DCEB
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_500_p_scaffold_556_30
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28653..30983
DNA (2331bp) protein (777aa)
Phosphomannomutase n=1 Tax=Rhodanobacter denitrificans RepID=I4WGW4_9GAMM rbh
phosphomannomutase rbh
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
Displaying items 1-30 of 39 in total

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