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SCNpilot_expt_500_p_scaffold_699

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Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_699_1
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..232
DNA (231bp) protein (77aa)
pyrophosphatase n=1 Tax=Methylophilus methylotrophus RepID=UPI00036FDC16
vacuolar-type H(+)-translocating pyrophosphatase
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_500_p_scaffold_699_2
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

375..2507
DNA (2133bp) protein (711aa)
Prolyl oligopeptidase n=1 Tax=Rhodanobacter sp. 115 RepID=I4WDF8_9GAMM rbh
Prolyl oligopeptidase {ECO:0000313|EMBL:EIL97499.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
serine protease, S9A family peptidase
SCNpilot_expt_500_p_scaffold_699_3
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3061..3891
DNA (831bp) protein (277aa)
2OG-Fe(II) oxygenase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VS01_9GAMM
2OG-Fe(II) oxygenase {ECO:0000313|EMBL:EIL89992.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
2OG-Fe(II) oxygenase superfamily enzyme
SCNpilot_expt_500_p_scaffold_699_4
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4026..4562
DNA (537bp) protein (179aa)
Inorganic pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_00209}; EC=3.6.1.1 {ECO:0000256|HAMAP-Rule:MF_00209};; Pyrophosphate phospho-hydrolase {ECO:0000256|HAMAP-Rule:MF_00209}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
Inorganic pyrophosphatase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VS02_9GAMM
inorganic pyrophosphatase rbh
SCNpilot_expt_500_p_scaffold_699_5
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4609..5559)
DNA (951bp) protein (317aa)
LysR family transcriptional regulator n=1 Tax=Rhodanobacter sp. 115 RepID=I4WDG1_9GAMM rbh
LysR family transcriptional regulator {ECO:0000313|EMBL:EIL97502.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
LysR family transcriptional regulator rbh
SCNpilot_expt_500_p_scaffold_699_6
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5658..6851
DNA (1194bp) protein (398aa)
MFS family sugar exporter n=1 Tax=Rhodanobacter sp. 115 RepID=I4WDG2_9GAMM rbh
MFS family sugar exporter {ECO:0000313|EMBL:EIL97503.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
araJ; arabinose efflux porter AraJ; K08156 MFS transporter, DHA1 family, arabinose polymer transporter
SCNpilot_expt_500_p_scaffold_699_7
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6881..7945
DNA (1065bp) protein (355aa)
Oxidoreductase MocA n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VS06_9GAMM rbh
aldo/keto reductase rbh
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_500_p_scaffold_699_8
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7942..8958
DNA (1017bp) protein (339aa)
Oxidoreductase n=1 Tax=Rhodanobacter sp. 115 RepID=I4WDG3_9GAMM rbh
Oxidoreductase {ECO:0000313|EMBL:EIL97504.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
zinc-binding alcohol dehydrogenase family protein rbh
SCNpilot_expt_500_p_scaffold_699_9
Legionella longbeachae, Legionella, Legionellales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8989..9222)
DNA (234bp) protein (78aa)
Putative membrane protein n=2 Tax=Legionella longbeachae RepID=D3HP41_LEGLN
hypothetical protein
Putative membrane protein {ECO:0000313|EMBL:CBJ10654.1}; TaxID=661367 species="Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales; Legionellaceae; Legionella.;" source="Legionella longbeachae serogroup 1 (strain NSW150).;"
SCNpilot_expt_500_p_scaffold_699_10
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9403..9981)
DNA (579bp) protein (193aa)
Bacterioferritin (Cytochrome b1) n=1 Tax=Rhodanobacter sp. 115 RepID=I4WDG4_9GAMM
Bacterioferritin (Cytochrome b1) {ECO:0000313|EMBL:EIL97505.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
bacterioferritin (cytochrome b1)
SCNpilot_expt_500_p_scaffold_699_11
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10107..11984)
DNA (1878bp) protein (626aa)
Phosphomethylpyrimidine synthase {ECO:0000256|HAMAP-Rule:MF_00089, ECO:0000256|SAAS:SAAS00007814}; EC=4.1.99.17 {ECO:0000256|HAMAP-Rule:MF_00089, ECO:0000256|SAAS:SAAS00007809};; Hydroxymethylpyrimidine phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00089}; Thiamine biosynthesis protein ThiC {ECO:0000256|HAMAP-Rule:MF_00089}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
Phosphomethylpyrimidine synthase n=1 Tax=Rhodanobacter sp. 115 RepID=I4WDG7_9GAMM rbh
thiamine biosynthesis protein ThiC; K03147 thiamine biosynthesis protein ThiC
SCNpilot_expt_500_p_scaffold_699_12
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12234..12884)
DNA (651bp) protein (217aa)
Transcriptional regulator n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W3A6_9GAMM
Transcriptional regulator {ECO:0000313|EMBL:EIL93947.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
transcriptional regulator
SCNpilot_expt_500_p_scaffold_699_13
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13123..13782
DNA (660bp) protein (220aa)
Protein-L-isoaspartate carboxylmethyltransferase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WDV0_9GAMM rbh
Protein-L-isoaspartate carboxylmethyltransferase {ECO:0000313|EMBL:EIL97641.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
protein-L-isoaspartate carboxylmethyltransferase rbh
SCNpilot_expt_500_p_scaffold_699_14
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13823..15172
DNA (1350bp) protein (450aa)
TolC family type I secretion outer membrane protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VS11_9GAMM rbh
Protein CyaE {ECO:0000256|PIRNR:PIRNR001892}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
type I secretion outer membrane protein, TolC family rbh
SCNpilot_expt_500_p_scaffold_699_15
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15236..16510)
DNA (1275bp) protein (425aa)
3-deoxy-D-manno-octulosonic-acid transferase n=1 Tax=Rhodanobacter denitrificans RepID=I4WHN6_9GAMM
3-deoxy-D-manno-octulosonic-acid transferase
3-deoxy-D-manno-octulosonic-acid transferase {ECO:0000313|EMBL:AGG87538.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_p_scaffold_699_16
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16599..17525
DNA (927bp) protein (309aa)
Lipid A biosynthesis lauroyltransferase {ECO:0000256|HAMAP-Rule:MF_01942}; EC=2.3.1.241 {ECO:0000256|HAMAP-Rule:MF_01942};; Kdo(2)-lipid IV(A) lauroyltransferase {ECO:0000256|HAMAP-Rule:MF_01942}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Lipid A biosynthesis lauroyl acyltransferase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WDV3_9GAMM rbh
lipid A biosynthesis lauroyl/palmitoleoyl acyltransferase rbh
SCNpilot_expt_500_p_scaffold_699_17
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17612..18340
DNA (729bp) protein (243aa)
Polysaccharide deacetylase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WDV4_9GAMM
putative xylanase/chitin deacetylase
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_500_p_scaffold_699_18
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18337..19428
DNA (1092bp) protein (364aa)
Glycosyl transferase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WDV5_9GAMM
Glycosyl transferase {ECO:0000313|EMBL:EIL97646.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
glycosyltransferase
SCNpilot_expt_500_p_scaffold_699_19
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19741..20502)
DNA (762bp) protein (254aa)
Lipopolysaccharide core biosynthesis glycosyl transferase (KdtX) n=1 Tax=Rhodanobacter sp. 115 RepID=I4WDH6_9GAMM rbh
Lipopolysaccharide core biosynthesis glycosyl transferase (KdtX) {ECO:0000313|EMBL:EIL97517.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
glycosyl transferase
SCNpilot_expt_500_p_scaffold_699_20
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20492..21850)
DNA (1359bp) protein (453aa)
Lipid A core--O-antigen ligase-like protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WHN1_9GAMM
Lipid A core--O-antigen ligase-like protein {ECO:0000313|EMBL:EIL97648.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
lipid A core-O-antigen ligase-like enyme
SCNpilot_expt_500_p_scaffold_699_21
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21860..23029)
DNA (1170bp) protein (390aa)
Glycosyltransferase n=1 Tax=Rhodanobacter denitrificans RepID=I4WHN0_9GAMM
Glycosyltransferase {ECO:0000313|EMBL:EIL97649.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
glycosyltransferase
SCNpilot_expt_500_p_scaffold_699_22
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23082..23288)
DNA (207bp) protein (69aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI000348DD5F
Uncharacterized protein {ECO:0000313|EMBL:AHX15686.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_699_23
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23429..24013)
DNA (585bp) protein (195aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4WG22_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIL98413.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_699_24
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24262..25218
DNA (957bp) protein (319aa)
Putative nucleoside-diphosphate-sugar epimerase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W3B7_9GAMM rbh
Putative nucleoside-diphosphate-sugar epimerase {ECO:0000313|EMBL:EIL93958.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
putative nucleoside-diphosphate-sugar epimerase
SCNpilot_expt_500_p_scaffold_699_25
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25274..28330)
DNA (3057bp) protein (1019aa)
Glutamate-ammonia-ligase adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00802, ECO:0000256|SAAS:SAAS00015000}; EC=2.7.7.42 {ECO:0000256|HAMAP-Rule:MF_00802, ECO:0000256|SAAS:SAAS00015004};; Glutamine-synthase adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00802}; [Glutamate--ammonia-ligase] adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00802}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Glutamate-ammonia-ligase adenylyltransferase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WAV5_9GAMM rbh
glutamine synthetase adenylyltransferase rbh
SCNpilot_expt_500_p_scaffold_699_26
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28347..30170
DNA (1824bp) protein (608aa)
Phosphoglycerol transferase n=1 Tax=Rhodanobacter denitrificans RepID=I4WHM3_9GAMM
phosphoglycerol transferase family protein, alkaline phosphatase superfamily
Phosphoglycerol transferase family protein, alkaline phosphatase superfamily {ECO:0000313|EMBL:AGG87525.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_p_scaffold_699_27
Pseudomonas sp. M1, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30198..30857)
DNA (660bp) protein (220aa)
Uncharacterized protein n=1 Tax=Pseudomonas sp. (strain M1) RepID=L1HX38_PSEUO
Helicase {ECO:0000313|EMBL:ETM68007.1}; TaxID=95619 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. (strain M1).;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_699_28
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31124..31603)
DNA (480bp) protein (160aa)
60 kDa chaperonin n=1 Tax=Rhodanobacter sp. 115 RepID=I4W462_9GAMM
60 kDa chaperonin {ECO:0000256|RuleBase:RU000419}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
chaperonin GroL
SCNpilot_expt_500_p_scaffold_699_29
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31600..32028)
DNA (429bp) protein (143aa)
molecular chaperone GroEL n=1 Tax=Dyella ginsengisoli RepID=UPI0003464AF9
60 kDa chaperonin {ECO:0000256|RuleBase:RU000419}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
chaperonin GroL; K04077 chaperonin GroEL
Displaying 29 items

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