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SCNpilot_expt_500_p_scaffold_978

Search features with annotation key words

Displaying items 1-30 of 44 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_978_1
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

348..1628
DNA (1281bp) protein (427aa)
Serine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00176}; EC=6.1.1.11 {ECO:0000256|HAMAP-Rule:MF_00176};; Seryl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00176}; Seryl-tRNA(Ser/Sec) synthetase {ECO:0000256|HAMAP-Rule:MF_00176}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
seryl-tRNA synthetase; K01875 seryl-tRNA synthetase [EC:6.1.1.11] rbh
seryl-tRNA synthetase n=1 Tax=Dyella japonica RepID=UPI0002F5E1BB rbh
SCNpilot_expt_500_p_scaffold_978_2
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1625..2002
DNA (378bp) protein (126aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4W0L9_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL93010.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_978_3
Arenimonas composti, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2443..3045
DNA (603bp) protein (201aa)
Uncharacterized protein n=1 Tax=Desulfomicrobium baculatum (strain DSM 4028 / VKM B-1378) RepID=C7LPI0_DESBD
Uncharacterized protein {ECO:0000313|EMBL:KFN46425.1}; Flags: Fragment;; TaxID=1121013 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas composti TR7-09 = DSM 18010.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_978_4
unknown

Not on your lists

3334..3834
DNA (501bp) protein (167aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_978_5
unknown

Not on your lists

comp(4084..4455)
DNA (372bp) protein (124aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_978_6
unknown

Not on your lists

comp(4686..5111)
DNA (426bp) protein (142aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_978_7
unknown

Not on your lists

comp(5182..5538)
DNA (357bp) protein (119aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_978_8
Snodgrassella alvi, Snodgrassella, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6157..7245
DNA (1089bp) protein (363aa)
putative alcohol dehydrogenase, zinc-containing (EC:1.1.1.-); K00001 alcohol dehydrogenase [EC:1.1.1.1] rbh
Uncharacterized protein n=2 Tax=Pseudomonas aeruginosa RepID=U8KK57_PSEAI rbh
Threonine dehydrogenase and related Zn-dependent dehydrogenase {ECO:0000313|EMBL:AHN28942.1}; TaxID=1196094 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; Snodgrassella.;" source="Snodgrassella alvi wkB2.;"
SCNpilot_expt_500_p_scaffold_978_9
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7332..7832)
DNA (501bp) protein (167aa)
N-acetyltransferase GCN5; K03824 putative acetyltransferase [EC:2.3.1.-]
GCN5-related N-acetyltransferase n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7AAS8_STAND
GCN5-related N-acetyltransferase {ECO:0000313|EMBL:ADH90945.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
SCNpilot_expt_500_p_scaffold_978_10
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8095..8343)
DNA (249bp) protein (83aa)
Uncharacterized protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VTV0_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL90641.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_978_11
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8398..8583)
DNA (186bp) protein (62aa)
hypothetical protein n=1 Tax=Methylopila sp. M107 RepID=UPI00037FEFC0
CsbD-like protein {ECO:0000313|EMBL:EIM03969.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_978_12
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8955..12191)
DNA (3237bp) protein (1079aa)
TonB-dependent receptor n=1 Tax=Rhodanobacter sp. 115 RepID=I4W586_9GAMM rbh
TonB-dependent receptor {ECO:0000313|EMBL:EIL94627.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
TonB-dependent receptor rbh
SCNpilot_expt_500_p_scaffold_978_13
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12249..14810)
DNA (2562bp) protein (854aa)
glycoside hydrolase family protein; K01188 beta-glucosidase [EC:3.2.1.21]
Glycoside hydrolase family protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W4F1_9GAMM
Glycoside hydrolase family protein {ECO:0000313|EMBL:EIL94342.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
SCNpilot_expt_500_p_scaffold_978_14
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15014..16027
DNA (1014bp) protein (338aa)
LacI family transcriptional regulator n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VWL3_9GAMM rbh
LacI family transcriptional regulator {ECO:0000313|EMBL:EIL91604.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
LacI family transcriptional regulator; K02529 LacI family transcriptional regulator
SCNpilot_expt_500_p_scaffold_978_15
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16133..17476
DNA (1344bp) protein (448aa)
Major facilitator superfamily protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4W584_9GAMM rbh
Major facilitator superfamily protein {ECO:0000313|EMBL:EIL94625.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
major facilitator superfamily protein rbh
SCNpilot_expt_500_p_scaffold_978_16
Burkholderia sp. H160, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17597..19897)
DNA (2301bp) protein (767aa)
nitric oxide reductase; K04561 nitric oxide reductase subunit B [EC:1.7.2.5] rbh
Nitric oxide reductase n=1 Tax=Burkholderia sp. H160 RepID=B5WCL6_9BURK rbh
Nitric oxide reductase {ECO:0000313|EMBL:EEA03904.1}; TaxID=516466 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. H160.;"
SCNpilot_expt_500_p_scaffold_978_17
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20152..21549
DNA (1398bp) protein (466aa)
Coproporphyrinogen-III oxidase {ECO:0000256|PIRNR:PIRNR000167}; EC=1.3.99.22 {ECO:0000256|PIRNR:PIRNR000167};; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
Coproporphyrinogen-III oxidase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VYU2_9GAMM
oxygen-independent coproporphyrinogen III oxidase
SCNpilot_expt_500_p_scaffold_978_18
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21546..22337
DNA (792bp) protein (264aa)
Crp/Fnr family transcriptional regulator n=1 Tax=Rhodanobacter denitrificans RepID=I4WYI0_9GAMM
cAMP-binding protein
cAMP-binding protein {ECO:0000313|EMBL:AGG89998.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_p_scaffold_978_19
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22420..22971
DNA (552bp) protein (184aa)
Cytochrome B561 n=1 Tax=Rhodanobacter denitrificans RepID=M4NIN0_9GAMM
cytochrome B561
Cytochrome B561 {ECO:0000313|EMBL:AGG89952.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_p_scaffold_978_20
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23180..24538
DNA (1359bp) protein (453aa)
Major anaerobically induced outer membrane transmembrane protein (Fragment) n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WGC1_9GAMM
dissimilatory nitrite reductase (NO-forming), copper type apoprotein
Major anaerobically induced outer membrane transmembrane protein {ECO:0000313|EMBL:EIL98512.1}; Flags: Fragment;; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
SCNpilot_expt_500_p_scaffold_978_21
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24540..25298
DNA (759bp) protein (253aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WGC2_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIL98513.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein rbh
SCNpilot_expt_500_p_scaffold_978_22
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25435..26001
DNA (567bp) protein (189aa)
SCO1/SenC family protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WGC3_9GAMM
SCO1/SenC family protein {ECO:0000313|EMBL:EIL98514.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems
SCNpilot_expt_500_p_scaffold_978_23

Not on your lists

26113..27432
DNA (1320bp) protein (440aa)
Outer membrane porin (Fragment) n=2 Tax=mine drainage metagenome RepID=T1AS82_9ZZZZ rbh
Outer membrane porin {ECO:0000313|EMBL:EQD63431.1}; Flags: Fragment;; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein rbh
SCNpilot_expt_500_p_scaffold_978_24
unknown

Not on your lists

27558..27752
DNA (195bp) protein (65aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00036B0E50
SCNpilot_expt_500_p_scaffold_978_25
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27733..28977
DNA (1245bp) protein (415aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034BCD77 rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG89994.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_p_scaffold_978_26
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28988..29377
DNA (390bp) protein (130aa)
DGC domain containing protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WAL0_9GAMM
DGC domain containing protein {ECO:0000313|EMBL:EIL96501.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_978_27
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29367..30206
DNA (840bp) protein (280aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W0N4_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIL93025.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_978_28
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30250..31275
DNA (1026bp) protein (342aa)
quinolinate synthetase (EC:2.5.1.72)
Quinolinate synthetase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WAL1_9GAMM
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_500_p_scaffold_978_29
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31272..32717
DNA (1446bp) protein (482aa)
L-aspartate oxidase n=1 Tax=Rhodanobacter denitrificans RepID=I4WYI7_9GAMM
L-aspartate oxidase {ECO:0000313|EMBL:EIL96503.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
aspartate oxidase
SCNpilot_expt_500_p_scaffold_978_30
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32843..33358
DNA (516bp) protein (172aa)
beta-hydroxyacyl-(acyl carrier protein) dehydratase FabA (EC:4.2.1.59)
3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase {ECO:0000256|HAMAP-Rule:MF_00405, ECO:0000256|SAAS:SAAS00064161}; EC=4.2.1.59 {ECO:0000256|HAMAP-Rule:MF_00405, ECO:0000256|SAAS:SAAS00064166};; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA {ECO:0000256|HAMAP-Rule:MF_00405}; Beta-hydroxydecanoyl thioester dehydrase {ECO:0000256|HAMAP-Rule:MF_00405}; Trans-2-decenoyl-[acyl-carrier-protein] isomerase {ECO:0000256|HAMAP-Rule:MF_00405}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobact
3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WAL3_9GAMM
Displaying items 1-30 of 44 in total

View Taxonomy
NameRatio
Rhodanobacter
70.45%
unknown
15.91%
Dyella
4.55%
Starkeya
2.27%
Snodgrassella
2.27%
Burkholderia
2.27%
Arenimonas
2.27%
Rhodanobacter: 0.7045454545454546unknown: 0.1590909090909091Dyella: 0.045454545454545456Arenimonas: 0.022727272727272728Burkholderia: 0.022727272727272728Snodgrassella: 0.022727272727272728Starkeya: 0.022727272727272728Rhodanobacterunknown