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SCNpilot_expt_500_p_scaffold_4688

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Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_4688_1
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2..640)
DNA (639bp) protein (213aa)
Acetyl-CoA carboxylase biotin carboxylase subunit {ECO:0000313|EMBL:EIL96584.1}; EC=6.4.1.2 {ECO:0000313|EMBL:EIL96584.1};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
acetyl-CoA carboxylase biotin carboxylase subunit n=1 Tax=Dyella ginsengisoli RepID=UPI00034588E5
acetyl-CoA carboxylase, biotin carboxylase subunit
SCNpilot_expt_500_p_scaffold_4688_2
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(637..954)
DNA (318bp) protein (106aa)
Uncharacterized protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VPW0_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL89251.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_4688_3
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1032..1496)
DNA (465bp) protein (155aa)
Acetyl-CoA carboxylase {ECO:0000313|EMBL:AHX15663.1}; EC=6.4.1.2 {ECO:0000313|EMBL:AHX15663.1};; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
acetyl-CoA carboxylase biotin carboxyl carrier protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034BDA9C
biotin carboxyl carrier protein
SCNpilot_expt_500_p_scaffold_4688_4
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1554..1997)
DNA (444bp) protein (148aa)
3-dehydroquinate dehydratase {ECO:0000256|HAMAP-Rule:MF_00169, ECO:0000256|SAAS:SAAS00027752}; Short=3-dehydroquinase {ECO:0000256|HAMAP-Rule:MF_00169};; EC=4.2.1.10 {ECO:0000256|HAMAP-Rule:MF_00169, ECO:0000256|SAAS:SAAS00027752};; Type II DHQase {ECO:0000256|HAMAP-Rule:MF_00169}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
3-dehydroquinate dehydratase (EC:4.2.1.10)
3-dehydroquinate dehydratase n=1 Tax=Dyella ginsengisoli RepID=UPI000344C1C0
SCNpilot_expt_500_p_scaffold_4688_5
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2136..2678)
DNA (543bp) protein (181aa)
Thiol-disulfide isomerase-like thioredoxin (Fragment) n=1 Tax=Rhodanobacter sp. 115 RepID=I4WHJ9_9GAMM
Redoxin {ECO:0000313|EMBL:AHX15665.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
thiol-disulfide isomerase-like thioredoxin
SCNpilot_expt_500_p_scaffold_4688_6
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2743..4950)
DNA (2208bp) protein (736aa)
C-type cytochrome biogenesis protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WHL7_9GAMM
thiol:disulfide interchange protein
Thiol:disulfide interchange protein {ECO:0000313|EMBL:AGG87519.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_p_scaffold_4688_7
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5017..5343)
DNA (327bp) protein (109aa)
Periplasmic divalent cation tolerance protein cutA n=1 Tax=Rhodanobacter sp. 115 RepID=I4VM65_9GAMM
Periplasmic divalent cation tolerance protein cutA {ECO:0000313|EMBL:EIL88306.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
uncharacterized protein involved in tolerance to divalent cations
SCNpilot_expt_500_p_scaffold_4688_8
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5401..6378)
DNA (978bp) protein (326aa)
Transmembrane protease, serine 11D n=1 Tax=Xanthomonas translucens pv. graminis ART-Xtg29 RepID=K8Z2R8_XANCT
Uncharacterized protein {ECO:0000313|EMBL:KGI78808.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
Trypsin
SCNpilot_expt_500_p_scaffold_4688_9
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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6604..6897
DNA (294bp) protein (98aa)
molecular chaperone GroES n=1 Tax=Dyella ginsengisoli RepID=UPI00034CC764
10 kDa chaperonin {ECO:0000256|HAMAP-Rule:MF_00580, ECO:0000256|RuleBase:RU000535}; GroES protein {ECO:0000256|HAMAP-Rule:MF_00580}; Protein Cpn10 {ECO:0000256|HAMAP-Rule:MF_00580}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
Co-chaperonin GroES
SCNpilot_expt_500_p_scaffold_4688_10
Frateuria aurantia, Frateuria, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7017..7637
DNA (621bp) protein (207aa)
60 kDa chaperonin n=1 Tax=Frateuria aurantia (strain ATCC 33424 / DSM 6220 / NBRC 3245 / NCIMB 13370) RepID=H8L207_FRAAD
chaperonin GroL; K04077 chaperonin GroEL
60 kDa chaperonin {ECO:0000256|HAMAP-Rule:MF_00600, ECO:0000256|RuleBase:RU000419}; GroEL protein {ECO:0000256|HAMAP-Rule:MF_00600}; Protein Cpn60 {ECO:0000256|HAMAP-Rule:MF_00600}; TaxID=767434 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Frateuria.;" source="Frateuria aurantia (strain ATCC 33424 / DSM 6220 / NBRC 3245 / NCIMB; 13370) (Acetobacter aurantius).;"
Displaying 10 items

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