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SCNpilot_expt_500_p_scaffold_384

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Displaying items 1-30 of 43 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_384_1

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comp(1..447)
DNA (447bp) protein (149aa)
LysR substrate binding domain n=1 Tax=uncultured organism RepID=T1WC07_9ZZZZ
LysR substrate binding domain {ECO:0000313|EMBL:AGU12049.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
LysR family transcriptional regulator
SCNpilot_expt_500_p_scaffold_384_2

Not on your lists

529..1761
DNA (1233bp) protein (411aa)
Major Facilitator Superfamily n=1 Tax=uncultured organism RepID=T1WD06_9ZZZZ rbh
Major Facilitator Superfamily {ECO:0000313|EMBL:AGU12050.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
major facilitator superfamily MFS_1 rbh
SCNpilot_expt_500_p_scaffold_384_3
Microbacterium testaceum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1899..3416
DNA (1518bp) protein (506aa)
adenosine deaminase; K13529 AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] rbh
DNA-3-methyladenine glycosylase n=1 Tax=Microbacterium sp. B19 RepID=UPI0003B43831 rbh
Adenosine deaminase {ECO:0000313|EMBL:BAJ73658.1}; TaxID=979556 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium testaceum (strain StLB037).;"
SCNpilot_expt_500_p_scaffold_384_4
Microbacterium testaceum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3413..3910
DNA (498bp) protein (166aa)
methylated DNA-protein cysteine methyltransferase; K00567 methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
methylated-DNA--protein-cysteine methyltransferase n=1 Tax=Microbacterium sp. B19 RepID=UPI00034C3F9A rbh
Methylated DNA-protein cysteine methyltransferase {ECO:0000313|EMBL:BAJ73657.1}; TaxID=979556 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium testaceum (strain StLB037).;"
SCNpilot_expt_500_p_scaffold_384_5
Microbacterium testaceum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4302..6191
DNA (1890bp) protein (630aa)
ABC transporter n=1 Tax=Microbacterium sp. B19 RepID=UPI0003B3686A rbh
ABC-type multidrug transport system, ATPase and permease components {ECO:0000313|EMBL:BAJ73656.1}; TaxID=979556 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium testaceum (strain StLB037).;"
multidrug ABC transporter ATPase/permease; K06147 ATP-binding cassette, subfamily B, bacterial rbh
SCNpilot_expt_500_p_scaffold_384_6
Microbacterium sp. SUBG005, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6188..8005
DNA (1818bp) protein (606aa)
ABC transporter n=1 Tax=Microbacterium sp. B19 RepID=UPI000346BDB2 rbh
ABC transporter {ECO:0000313|EMBL:KEP74596.1}; TaxID=1504156 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. SUBG005.;"
multidrug ABC transporter ATPase/permease; K06147 ATP-binding cassette, subfamily B, bacterial rbh
SCNpilot_expt_500_p_scaffold_384_7
Microbacterium sp. SUBG005, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8334..8786)
DNA (453bp) protein (151aa)
speG; histone acetyltransferase HPA2; K00657 diamine N-acetyltransferase [EC:2.3.1.57]
acetyltransferase n=1 Tax=Microbacterium sp. B19 RepID=UPI00034C5230
Acetyltransferase {ECO:0000313|EMBL:KEP74594.1}; TaxID=1504156 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. SUBG005.;"
SCNpilot_expt_500_p_scaffold_384_8
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9029..11248
DNA (2220bp) protein (740aa)
Isocitrate dehydrogenase {ECO:0000313|EMBL:KIC58517.1}; EC=1.1.1.42 {ECO:0000313|EMBL:KIC58517.1};; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
monomeric isocitrate dehydrogenase; K00031 isocitrate dehydrogenase [EC:1.1.1.42] rbh
isocitrate dehydrogenase n=1 Tax=Microbacterium sp. B19 RepID=UPI00034DEF29 rbh
SCNpilot_expt_500_p_scaffold_384_9
Microbacterium testaceum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11432..12865)
DNA (1434bp) protein (478aa)
hypothetical protein n=1 Tax=Microbacterium sp. B19 RepID=UPI000348B5BC rbh
hypothetical protein rbh
Uncharacterized protein conserved in bacteria {ECO:0000313|EMBL:BAJ73650.1}; TaxID=979556 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium testaceum (strain StLB037).;"
SCNpilot_expt_500_p_scaffold_384_10
Microbacterium testaceum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(12932..14296)
DNA (1365bp) protein (455aa)
FAD/FMN-containing dehydrogenase; K00104 glycolate oxidase [EC:1.1.3.15] rbh
FAD/FMN-containing dehydrogenase n=1 Tax=Microbacterium testaceum (strain StLB037) RepID=E8ND10_MICTS rbh
FAD/FMN-containing dehydrogenase {ECO:0000313|EMBL:BAJ73649.1}; TaxID=979556 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium testaceum (strain StLB037).;"
SCNpilot_expt_500_p_scaffold_384_11
Microbacterium sp. SUBG005, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14293..14679)
DNA (387bp) protein (129aa)
4-amino-4-deoxy-L-arabinose transferase n=1 Tax=Microbacterium sp. B19 RepID=UPI00034CEF41
4-amino-4-deoxy-L-arabinose transferase {ECO:0000313|EMBL:KEP74489.1}; TaxID=1504156 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. SUBG005.;"
4-amino-4-deoxy-L-arabinose transferase
SCNpilot_expt_500_p_scaffold_384_12
Microbacterium testaceum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14918..16192
DNA (1275bp) protein (425aa)
glyA; glycine/serine hydroxymethyltransferase; K00600 glycine hydroxymethyltransferase [EC:2.1.2.1] rbh
Serine hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00051}; Short=SHMT {ECO:0000256|HAMAP-Rule:MF_00051};; Short=Serine methylase {ECO:0000256|HAMAP-Rule:MF_00051};; EC=2.1.2.1 {ECO:0000256|HAMAP-Rule:MF_00051};; TaxID=979556 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium testaceum (strain StLB037).;"
serine hydroxymethyltransferase n=1 Tax=Microbacterium sp. B19 RepID=UPI00034B29D5 rbh
SCNpilot_expt_500_p_scaffold_384_13
Microbacterium testaceum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16375..17259
DNA (885bp) protein (295aa)
5,10-methylene-tetrahydrofolate dehydrogenase/methenyl tetrahydrofolate cyclohydrolase; K01491 methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9] rbh
bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase n=1 Tax=Microbacterium sp. B19 RepID=UPI0003475DB6 rbh
Bifunctional protein FolD {ECO:0000256|HAMAP-Rule:MF_01576}; TaxID=979556 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium testaceum (strain StLB037).;"
SCNpilot_expt_500_p_scaffold_384_14
Microbacterium testaceum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17459..17947
DNA (489bp) protein (163aa)
cytochrome C5 n=1 Tax=Microbacterium sp. B19 RepID=UPI0003B3D627
hypothetical protein
Uncharacterized protein conserved in bacteria {ECO:0000313|EMBL:BAJ73645.1}; TaxID=979556 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium testaceum (strain StLB037).;"
SCNpilot_expt_500_p_scaffold_384_15
Microbacterium sp. SUBG005, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17998..18798)
DNA (801bp) protein (267aa)
2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; K02510 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [EC:4.1.2.-] rbh
alpha-dehydro-beta-deoxy-D-glucarate aldolase n=1 Tax=Microbacterium sp. B19 RepID=UPI00034C437D rbh
Alpha-dehydro-beta-deoxy-D-glucarate aldolase {ECO:0000313|EMBL:KEP74312.1}; TaxID=1504156 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. SUBG005.;"
SCNpilot_expt_500_p_scaffold_384_16
Microbacterium sp. SUBG005, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18783..19568)
DNA (786bp) protein (262aa)
2-keto-4-pentenoate hydratase; K02509 2-oxo-hept-3-ene-1,7-dioate hydratase [EC:4.2.1.-] rbh
2-oxo-hept-3-ene-1,7-dioate hydratase n=1 Tax=Microbacterium sp. B19 RepID=UPI00034A9911 rbh
2-oxo-hepta-3-ene-1,7-dioate hydratase {ECO:0000313|EMBL:KEP74311.1}; TaxID=1504156 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. SUBG005.;"
SCNpilot_expt_500_p_scaffold_384_17
Microbacterium testaceum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19578..20723)
DNA (1146bp) protein (382aa)
3,4-dihydroxyphenylacetate 2,3-dioxygenase n=1 Tax=Microbacterium sp. B19 RepID=UPI0003460B64 rbh
lactoylglutathione lyase rbh
Lactoylglutathione lyase {ECO:0000313|EMBL:BAJ73641.1}; TaxID=979556 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium testaceum (strain StLB037).;"
SCNpilot_expt_500_p_scaffold_384_18
Microbacterium sp. SUBG005, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20725..22239)
DNA (1515bp) protein (505aa)
Betaine-aldehyde dehydrogenase {ECO:0000313|EMBL:KEP74310.1}; EC=1.2.1.8 {ECO:0000313|EMBL:KEP74310.1};; TaxID=1504156 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. SUBG005.;"
NAD-dependent aldehyde dehydrogenase; K00151 5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase [EC:1.2.1.60] rbh
5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase n=2 Tax=Microbacterium RepID=H8E1A3_9MICO rbh
SCNpilot_expt_500_p_scaffold_384_19
Microbacterium sp. SUBG005, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22326..23036)
DNA (711bp) protein (237aa)
Uncharacterized protein n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3BDV4_9MICO rbh
GntR family transcriptional regulator {ECO:0000313|EMBL:KEP74309.1}; TaxID=1504156 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. SUBG005.;"
transcriptional regulator rbh
SCNpilot_expt_500_p_scaffold_384_20
Microbacterium sp. oral taxon 186, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23036..24577)
DNA (1542bp) protein (514aa)
hpaG; 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase (EC:5.3.3.10 4.1.1.68) rbh
hypothetical protein n=1 Tax=Microbacterium sp. B19 RepID=UPI0003B312A7 rbh
Uncharacterized protein {ECO:0000313|EMBL:EPD86808.1}; TaxID=1203549 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. oral taxon 186 str. F0373.;"
SCNpilot_expt_500_p_scaffold_384_21
Microbacterium sp. MEJ108Y, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24696..26078
DNA (1383bp) protein (461aa)
MFS transporter n=1 Tax=Leucobacter salsicius RepID=UPI000345BDED rbh
Contig_12, whole genome shotgun sequence {ECO:0000313|EMBL:KIP92797.1}; TaxID=1587523 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MEJ108Y.;"
yhjE; inner membrane metabolite transport protein YhjE rbh
SCNpilot_expt_500_p_scaffold_384_22
Agrococcus pavilionensis, Agrococcus, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26136..26534)
DNA (399bp) protein (133aa)
Uncharacterized protein n=1 Tax=Agrococcus pavilionensis RW1 RepID=U1MVR8_9MICO
Uncharacterized protein {ECO:0000313|EMBL:ERG64725.1}; TaxID=1330458 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Agrococcus.;" source="Agrococcus pavilionensis RW1.;"
SCNpilot_expt_500_p_scaffold_384_23
Microbacterium mangrovi, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26531..27451)
DNA (921bp) protein (307aa)
hypothetical protein n=1 Tax=Leucobacter salsicius RepID=UPI00034CC149 rbh
LysR family transcriptional regulator {ECO:0000313|EMBL:KHL00089.1}; TaxID=1348253 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium mangrovi.;"
LysR family transcriptional regulator
SCNpilot_expt_500_p_scaffold_384_24
Agrococcus pavilionensis, Agrococcus, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27566..30544
DNA (2979bp) protein (993aa)
cytochrome P450 monooxygenase; K00517 [EC:1.14.-.-] rbh
hypothetical protein n=1 Tax=Leucobacter salsicius RepID=UPI0003822606 rbh
Uncharacterized protein {ECO:0000313|EMBL:ERG64727.1}; TaxID=1330458 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Agrococcus.;" source="Agrococcus pavilionensis RW1.;"
SCNpilot_expt_500_p_scaffold_384_25
Leucobacter sp. UCD-THU, Leucobacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(30872..32224)
DNA (1353bp) protein (451aa)
FAD-dependent oxidoreductase; K00104 glycolate oxidase [EC:1.1.3.15]
FAD-linked oxidase n=1 Tax=Leucobacter sp. UCD-THU RepID=UPI0003732610 rbh
FAD-linked oxidase {ECO:0000313|EMBL:EYT53630.1}; TaxID=1292023 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leucobacter.;" source="Leucobacter sp. UCD-THU.;"
SCNpilot_expt_500_p_scaffold_384_26
Microbacterium mangrovi, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(32221..33873)
DNA (1653bp) protein (551aa)
acetolactate synthase (EC:2.2.1.6) rbh
thiamine pyrophosphate-binding protein n=1 Tax=Microbacterium sp. 292MF RepID=UPI000377CAAE rbh
Thiamine pyrophosphate-binding protein {ECO:0000313|EMBL:KHK95504.1}; TaxID=1348253 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium mangrovi.;"
SCNpilot_expt_500_p_scaffold_384_27
Microbacterium testaceum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(34063..34767)
DNA (705bp) protein (235aa)
Transcriptional regulator n=1 Tax=Microbacterium testaceum (strain StLB037) RepID=E8NCG6_MICTS rbh
transcriptional regulator rbh
Transcriptional regulator {ECO:0000313|EMBL:BAJ73614.1}; TaxID=979556 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium testaceum (strain StLB037).;"
SCNpilot_expt_500_p_scaffold_384_28
Microbacterium testaceum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

34865..36700
DNA (1836bp) protein (612aa)
2-polyprenyl-6-methoxyphenol hydroxylase; K03380 phenol 2-monooxygenase [EC:1.14.13.7] rbh
phenol 2-monooxygenase n=1 Tax=Microbacterium sp. B19 RepID=UPI00034D1E3D rbh
2-polyprenyl-6-methoxyphenol hydroxylase {ECO:0000313|EMBL:BAJ73613.1}; TaxID=979556 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium testaceum (strain StLB037).;"
SCNpilot_expt_500_p_scaffold_384_29
Microbacterium testaceum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

36961..38433
DNA (1473bp) protein (491aa)
gabD; NAD-dependent aldehyde dehydrogenase; K00135 succinate-semialdehyde dehydrogenase (NADP+) [EC:1.2.1.16] rbh
aldehyde dehydrogenase n=1 Tax=Microbacterium sp. B19 RepID=UPI0003482491 rbh
NAD-dependent aldehyde dehydrogenase {ECO:0000313|EMBL:BAJ73612.1}; TaxID=979556 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium testaceum (strain StLB037).;"
SCNpilot_expt_500_p_scaffold_384_30
Microbacterium testaceum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(38644..40083)
DNA (1440bp) protein (480aa)
XRE family transcriptional regulator n=1 Tax=Microbacterium sp. B19 RepID=UPI00034ADC02 rbh
hipB; transcriptional regulator rbh
Predicted transcriptional regulator {ECO:0000313|EMBL:BAJ73604.1}; TaxID=979556 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium testaceum (strain StLB037).;"
Displaying items 1-30 of 43 in total

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