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SCNpilot_expt_500_p_scaffold_856

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Displaying 29 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_856_1
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

242..1783
DNA (1542bp) protein (514aa)
Uncharacterized protein n=1 Tax=Delftia acidovorans CCUG 15835 RepID=S2Y0L9_DELAC rbh
Uncharacterized protein {ECO:0000313|EMBL:EPD45304.1}; TaxID=883100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 15835.;"
hypothetical protein rbh
SCNpilot_expt_500_p_scaffold_856_2
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1777..2373)
DNA (597bp) protein (199aa)
Type 11 methyltransferase n=1 Tax=Acidovorax sp. NO-1 RepID=H0BT05_9BURK rbh
Type 11 methyltransferase {ECO:0000313|EMBL:EHL24499.1}; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. NO-1.;"
type 11 methyltransferase rbh
SCNpilot_expt_500_p_scaffold_856_3
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2383..3270)
DNA (888bp) protein (296aa)
Type 12 methyltransferase n=1 Tax=Acidovorax sp. NO-1 RepID=H0BT04_9BURK rbh
Type 12 methyltransferase {ECO:0000313|EMBL:EHL24498.1}; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. NO-1.;"
type 12 methyltransferase
SCNpilot_expt_500_p_scaffold_856_4
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3342..3626)
DNA (285bp) protein (95aa)
Plasmid stabilization system n=1 Tax=Acidithiobacillus ferrooxidans (strain ATCC 53993) RepID=B5EKR0_ACIF5
plasmid stabilization system
Plasmid stabilization system {ECO:0000313|EMBL:ACH82522.1}; TaxID=380394 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 53993) (Leptospirillum; ferrooxidans (ATCC 53993)).;"
SCNpilot_expt_500_p_scaffold_856_5
Acetobacter pomorum, Acetobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3626..3817)
DNA (192bp) protein (64aa)
Putative uncharacterized protein n=1 Tax=Acetobacter pomorum DM001 RepID=F1YRX9_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EGE48454.1}; TaxID=945681 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acetobacter.;" source="Acetobacter pomorum DM001.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_856_6
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3903..5126)
DNA (1224bp) protein (408aa)
ABC transporter-like protein n=1 Tax=Acidovorax sp. NO-1 RepID=H0BT03_9BURK rbh
ABC transporter-like protein {ECO:0000313|EMBL:EHL24497.1}; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. NO-1.;"
ABC transporter-like protein rbh
SCNpilot_expt_500_p_scaffold_856_7
Burkholderia sp. Ch1-1, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5131..5472
DNA (342bp) protein (114aa)
hypothetical protein n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002624FA1
Uncharacterized protein {ECO:0000313|EMBL:EIF31816.1}; TaxID=243261 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. Ch1-1.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_856_8
Thauera phenylacetica, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5469..5843
DNA (375bp) protein (125aa)
Uncharacterized protein n=1 Tax=Thauera phenylacetica B4P RepID=N6ZS44_9RHOO
Uncharacterized protein {ECO:0000313|EMBL:ENO97158.1}; TaxID=1234382 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera phenylacetica B4P.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_856_9
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5857..6657)
DNA (801bp) protein (267aa)
ABC transporter; K09690 lipopolysaccharide transport system permease protein id=12552867 bin=BDI species=Acidovorax avenae genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria rbh
Transport permease protein {ECO:0000256|RuleBase:RU361157}; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. NO-1.;"
ABC transporter; K09690 lipopolysaccharide transport system permease protein rbh
SCNpilot_expt_500_p_scaffold_856_10
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6802..7677)
DNA (876bp) protein (292aa)
Peptidylprolyl isomerase {ECO:0000256|SAAS:SAAS00015172}; EC=5.2.1.8 {ECO:0000256|SAAS:SAAS00015172};; TaxID=883100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 15835.;"
PpiC-type peptidyl-prolyl cis-trans isomerase; K03769 peptidyl-prolyl cis-trans isomerase C [EC:5.2.1.8]
Peptidyl-prolyl cis-trans isomerase C n=1 Tax=Delftia acidovorans CCUG 15835 RepID=S2XGS5_DELAC
SCNpilot_expt_500_p_scaffold_856_11
Delftia sp. RIT313, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7764..9461)
DNA (1698bp) protein (566aa)
Putative uncharacterized protein n=1 Tax=Acidovorax citrulli (strain AAC00-1) RepID=A1TUQ1_ACIAC rbh
Surface layer protein NpdA {ECO:0000313|EMBL:EZP58778.1}; TaxID=1468410 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia sp. RIT313.;"
hypothetical protein rbh
SCNpilot_expt_500_p_scaffold_856_12
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9662..10090)
DNA (429bp) protein (143aa)
Putative uncharacterized protein n=1 Tax=Acidovorax sp. NO-1 RepID=H0BSZ9_9BURK
Putative uncharacterized protein {ECO:0000313|EMBL:EHL24493.1}; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. NO-1.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_856_13
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10093..12480)
DNA (2388bp) protein (796aa)
General secretion pathway protein D n=1 Tax=Acidovorax sp. NO-1 RepID=H0BSZ8_9BURK rbh
General secretion pathway protein D {ECO:0000313|EMBL:EHL24492.1}; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. NO-1.;"
general secretion pathway protein D; K02453 general secretion pathway protein D rbh
SCNpilot_expt_500_p_scaffold_856_14
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12487..13008)
DNA (522bp) protein (174aa)
Uncharacterized protein n=1 Tax=Verminephrobacter eiseniae (strain EF01-2) RepID=A1WFQ4_VEREI
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
SCNpilot_expt_500_p_scaffold_856_15
Verminephrobacter eiseniae, Verminephrobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13005..13559)
DNA (555bp) protein (185aa)
General secretion pathway protein M n=1 Tax=Verminephrobacter eiseniae (strain EF01-2) RepID=A1WFQ5_VEREI
general secretion pathway protein M; K02462 general secretion pathway protein M
General secretion pathway protein M {ECO:0000313|EMBL:ABM56462.1}; Flags: Precursor;; TaxID=391735 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Verminephrobacter.;" source="Verminephrobacter eiseniae (strain EF01-2).;"
SCNpilot_expt_500_p_scaffold_856_16
Acidovorax temperans, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13556..14623)
DNA (1068bp) protein (356aa)
Fimbrial assembly family protein n=1 Tax=Acidovorax sp. NO-1 RepID=H0BSZ5_9BURK
Uncharacterized protein {ECO:0000313|EMBL:KJA12059.1}; TaxID=80878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax temperans.;"
fimbrial assembly family protein; K02461 general secretion pathway protein L
SCNpilot_expt_500_p_scaffold_856_17
Acidovorax citrulli, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14632..15471)
DNA (840bp) protein (280aa)
General secretory pathway protein K n=1 Tax=Acidovorax citrulli (strain AAC00-1) RepID=A1TUQ7_ACIAC
general secretory pathway protein K; K02460 general secretion pathway protein K
General secretory pathway protein K {ECO:0000313|EMBL:ABM34695.1}; TaxID=397945 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax citrulli (strain AAC00-1) (Acidovorax avenae subsp.; citrulli).;"
SCNpilot_expt_500_p_scaffold_856_18
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15471..16130)
DNA (660bp) protein (220aa)
general secretion pathway protein J n=1 Tax=Acidovorax avenae RepID=UPI0002E2C7AD
General secretion pathway protein J {ECO:0000313|EMBL:EHL24487.1}; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. NO-1.;"
general secretion pathway protein J; K02459 general secretion pathway protein J
SCNpilot_expt_500_p_scaffold_856_19
Verminephrobacter eiseniae, Verminephrobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16127..16534)
DNA (408bp) protein (136aa)
General secretion pathway protein I n=1 Tax=Verminephrobacter eiseniae (strain EF01-2) RepID=A1WFQ9_VEREI
general secretion pathway protein I; K02458 general secretion pathway protein I
General secretion pathway protein I {ECO:0000313|EMBL:ABM56466.1}; Flags: Precursor;; TaxID=391735 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Verminephrobacter.;" source="Verminephrobacter eiseniae (strain EF01-2).;"
SCNpilot_expt_500_p_scaffold_856_20
Verminephrobacter eiseniae, Verminephrobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16531..17049)
DNA (519bp) protein (173aa)
General secretion pathway protein H n=1 Tax=Verminephrobacter eiseniae (strain EF01-2) RepID=A1WFR0_VEREI
general secretion pathway protein H; K02457 general secretion pathway protein H
General secretion pathway protein H {ECO:0000313|EMBL:ABM56467.1}; Flags: Precursor;; TaxID=391735 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Verminephrobacter.;" source="Verminephrobacter eiseniae (strain EF01-2).;"
SCNpilot_expt_500_p_scaffold_856_21
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17062..17496)
DNA (435bp) protein (145aa)
General secretion pathway protein G n=1 Tax=Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB 1011) RepID=F0Q488_ACIAP
general secretion pathway protein G; K02456 general secretion pathway protein G
General secretion pathway protein G {ECO:0000313|EMBL:ADX47918.1}; TaxID=643561 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB; 1011).;"
SCNpilot_expt_500_p_scaffold_856_22
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17480..18721)
DNA (1242bp) protein (414aa)
Type II secretion system protein n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T1D4_ACIDE rbh
Type II secretion system protein {ECO:0000313|EMBL:EER61692.1}; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
type II secretion system protein; K02455 general secretion pathway protein F rbh
SCNpilot_expt_500_p_scaffold_856_23
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18714..20438)
DNA (1725bp) protein (575aa)
General secretory pathway protein E n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T1D3_ACIDE
General secretory pathway protein E {ECO:0000313|EMBL:EER61691.1}; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
general secretory pathway protein E; K02454 general secretion pathway protein E
SCNpilot_expt_500_p_scaffold_856_24
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20669..21463
DNA (795bp) protein (265aa)
Fatty acid hydroxylase n=1 Tax=Delftia acidovorans (strain DSM 14801 / SPH-1) RepID=A9BXV7_DELAS
fatty acid hydroxylase
Fatty acid hydroxylase {ECO:0000313|EMBL:ABX33892.1}; TaxID=398578 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans (strain DSM 14801 / SPH-1).;"
SCNpilot_expt_500_p_scaffold_856_25
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21475..23376
DNA (1902bp) protein (634aa)
Uncharacterized protein n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T1D2_ACIDE rbh
Uncharacterized protein {ECO:0000313|EMBL:EER61690.1}; Flags: Precursor;; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
hypothetical protein rbh
SCNpilot_expt_500_p_scaffold_856_26
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23421..23993)
DNA (573bp) protein (191aa)
dtdp-4-dehydrorhamnose 3,5-epimerase (EC:5.1.3.13); K01790 dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
dTDP-4-dehydrorhamnose 3,5-epimerase n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TY14_ALIDB
dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {ECO:0000313|EMBL:GAO22210.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_500_p_scaffold_856_27
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24066..24956)
DNA (891bp) protein (297aa)
glucose-1-phosphate thymidylyltransferase (EC:2.7.7.24); K00973 glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
Glucose-1-phosphate thymidylyltransferase {ECO:0000256|RuleBase:RU003706}; EC=2.7.7.24 {ECO:0000256|RuleBase:RU003706};; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
Glucose-1-phosphate thymidylyltransferase n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1W3G4_ACISJ
SCNpilot_expt_500_p_scaffold_856_28
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24968..25858)
DNA (891bp) protein (297aa)
dtdp-4-dehydrorhamnose reductase (EC:1.1.1.133); K00067 dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
dTDP-4-dehydrorhamnose reductase {ECO:0000313|EMBL:ACM32034.1}; EC=1.1.1.133 {ECO:0000313|EMBL:ACM32034.1};; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
dTDP-4-dehydrorhamnose reductase n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MCN4_ACIET
SCNpilot_expt_500_p_scaffold_856_29
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25855..26415)
DNA (561bp) protein (187aa)
dtdp-glucose 4,6-dehydratase; K01710 dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
dTDP-glucose 4,6-dehydratase {ECO:0000256|RuleBase:RU004473}; EC=4.2.1.46 {ECO:0000256|RuleBase:RU004473};; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
dTDP-glucose 4,6-dehydratase n=2 Tax=Alicycliphilus denitrificans RepID=E8TY11_ALIDB
Displaying 29 items

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