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SCNpilot_expt_500_p_scaffold_232

Search features with annotation key words

Displaying items 1-30 of 82 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_232_1
unknown

Not on your lists

comp(2..775)
DNA (774bp) protein (258aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_232_2
unknown

Not on your lists

1101..1412
DNA (312bp) protein (104aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_232_3

Not on your lists

comp(1507..2436)
DNA (930bp) protein (310aa)
Esterase MY09-1 n=1 Tax=uncultured bacterium RepID=E0ZS40_9BACT
Esterase MY09-1 {ECO:0000313|EMBL:ADM67447.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
esterase/lipase
SCNpilot_expt_500_p_scaffold_232_4
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2531..3400)
DNA (870bp) protein (290aa)
Oxygen-dependent coproporphyrinogen-III oxidase {ECO:0000256|HAMAP-Rule:MF_00333}; Short=CPO {ECO:0000256|HAMAP-Rule:MF_00333};; Short=Coprogen oxidase {ECO:0000256|HAMAP-Rule:MF_00333};; Short=Coproporphyrinogenase {ECO:0000256|HAMAP-Rule:MF_00333};; EC=1.3.3.3 {ECO:0000256|HAMAP-Rule:MF_00333};; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
hemF; coproporphyrinogen III oxidase; K00228 coproporphyrinogen III oxidase [EC:1.3.3.3]
coproporphyrinogen III oxidase n=1 Tax=Fodinicurvata sediminis RepID=UPI0003B45E8A rbh
SCNpilot_expt_500_p_scaffold_232_5
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3393..3845)
DNA (453bp) protein (151aa)
tRNA (cytidine(34)-2'-O)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01885}; EC=2.1.1.207 {ECO:0000256|HAMAP-Rule:MF_01885};; tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL {ECO:0000256|HAMAP-Rule:MF_01885}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
RNA methyltransferase, TrmH family; K03216 tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]
tRNA (cytidine(34)-2'-O)-methyltransferase n=1 Tax=Caenispirillum salinarum AK4 RepID=K9GPL7_9PROT
SCNpilot_expt_500_p_scaffold_232_6
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3849..4898)
DNA (1050bp) protein (350aa)
Uncharacterized protein n=1 Tax=Caenispirillum salinarum AK4 RepID=K9H169_9PROT
Hydrolase {ECO:0000313|EMBL:KJB95217.1}; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
conserved membrane protein of unknown function
SCNpilot_expt_500_p_scaffold_232_7
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4906..6252)
DNA (1347bp) protein (449aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2EU41_9BACT
Nucleoside:proton symporter {ECO:0000313|EMBL:AIL12436.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
Na+ dependent nucleoside transporter; K03317 concentrative nucleoside transporter, CNT family rbh
SCNpilot_expt_500_p_scaffold_232_8
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6326..7744
DNA (1419bp) protein (473aa)
hypothetical protein COdytL_03521 id=4799276 bin=GWC2_Alphaproteobacteria_42_16 species=Candidatus Odyssella thessalonicensis genus=Candidatus Odyssella taxon_order=Rickettsiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good + rbh
hypothetical protein; K09760 DNA recombination protein RmuC
Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
SCNpilot_expt_500_p_scaffold_232_9
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7748..8290
DNA (543bp) protein (181aa)
Cytochrome c n=1 Tax=Oceanibaculum indicum P24 RepID=K2KLL6_9PROT
Uncharacterized protein {ECO:0000313|EMBL:AIL12437.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
cycM; cytochrome c
SCNpilot_expt_500_p_scaffold_232_10
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8302..10128
DNA (1827bp) protein (609aa)
Oligopeptide ABC transporter, periplasmic component n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7Z8D3_AZOL4 rbh
Uncharacterized protein {ECO:0000313|EMBL:AIL12438.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
oligopeptide ABC transporter, periplasmic component; K13893 microcin C transport system substrate-binding protein rbh
SCNpilot_expt_500_p_scaffold_232_11
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10137..11246
DNA (1110bp) protein (370aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2EJE3_9BACT rbh
Microcin ABC transporter permease {ECO:0000313|EMBL:AIL12439.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
oligopeptide ABC transporter, permease component rbh
SCNpilot_expt_500_p_scaffold_232_12
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11249..12280
DNA (1032bp) protein (344aa)
ABC transporter permease n=1 Tax=Hahella ganghwensis RepID=UPI00037E9F75 rbh
ABC transporter permease {ECO:0000313|EMBL:AIL12440.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
oligopeptide ABC transporter permease; K13895 microcin C transport system permease protein
SCNpilot_expt_500_p_scaffold_232_13
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12280..13872
DNA (1593bp) protein (531aa)
Peptide ABC transporter permease/ATPase n=1 Tax=Thalassospira profundimaris WP0211 RepID=K2LLE6_9PROT
Microcin ABC transporter ATP-binding protein {ECO:0000313|EMBL:AIL12441.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
ABC transporter; K13896 microcin C transport system ATP-binding protein
SCNpilot_expt_500_p_scaffold_232_14
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13954..14892
DNA (939bp) protein (313aa)
Malonyl CoA-acyl carrier protein transacylase {ECO:0000256|PIRNR:PIRNR000446}; EC=2.3.1.39 {ECO:0000256|PIRNR:PIRNR000446};; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
malonyl CoA-acyl carrier protein transacylase; K00645 [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
Malonyl CoA-acyl carrier protein transacylase n=2 Tax=Magnetospirillum gryphiswaldense RepID=A4TZ54_9PROT
SCNpilot_expt_500_p_scaffold_232_15
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14903..15640
DNA (738bp) protein (246aa)
3-oxoacyl-(Acyl-carrier-protein) reductase n=1 Tax=Methylocystis sp. (strain SC2) RepID=J7QU37_METSZ
3-oxoacyl-ACP synthase {ECO:0000313|EMBL:AIL12443.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
3-oxoacyl-(Acyl-carrier-protein) reductase
SCNpilot_expt_500_p_scaffold_232_16
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15730..15969
DNA (240bp) protein (80aa)
acyl carrier protein n=1 Tax=unclassified Alphaproteobacteria (miscellaneous) RepID=UPI000115DEF8
Acyl carrier protein {ECO:0000256|HAMAP-Rule:MF_01217, ECO:0000256|RuleBase:RU003545}; Short=ACP {ECO:0000256|HAMAP-Rule:MF_01217};; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
acpP; transit peptide-acyl carrier protein fusion protein
SCNpilot_expt_500_p_scaffold_232_17
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15981..17243
DNA (1263bp) protein (421aa)
3-oxoacyl-[acyl-carrier-protein] synthase 2 {ECO:0000256|PIRNR:PIRNR000447}; EC=2.3.1.179 {ECO:0000256|PIRNR:PIRNR000447};; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
fabF; 3-oxoacyl-ACP synthase; K09458 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
3-oxoacyl-[acyl-carrier-protein] synthase 2 n=1 Tax=Oceanibaculum indicum P24 RepID=K2JUM4_9PROT rbh
SCNpilot_expt_500_p_scaffold_232_18
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17287..18273
DNA (987bp) protein (329aa)
aminodeoxychorismate lyase n=1 Tax=Fodinicurvata sediminis RepID=UPI0003B5EB51
Uncharacterized protein {ECO:0000313|EMBL:AIL12446.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
aminodeoxychorismate lyase; K07082 UPF0755 protein
SCNpilot_expt_500_p_scaffold_232_19
unknown

Not on your lists

comp(18434..19435)
DNA (1002bp) protein (334aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_232_20
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19841..21058)
DNA (1218bp) protein (406aa)
Cyst wall-specific glycoprotein Jacob family protein n=1 Tax=Entamoeba invadens IP1 RepID=UPI0002C3D256
Uncharacterized protein {ECO:0000313|EMBL:AIL12447.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
mms4; MMS4 protein
SCNpilot_expt_500_p_scaffold_232_21
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21792..22463
DNA (672bp) protein (224aa)
Protein-L-isoaspartate O-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00090}; EC=2.1.1.77 {ECO:0000256|HAMAP-Rule:MF_00090};; L-isoaspartyl protein carboxyl methyltransferase {ECO:0000256|HAMAP-Rule:MF_00090}; Protein L-isoaspartyl methyltransferase {ECO:0000256|HAMAP-Rule:MF_00090}; Protein-beta-aspartate methyltransferase {ECO:0000256|HAMAP-Rule:MF_00090}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
pcm-1; protein-L-isoaspartate O-methyltransferase (EC:2.1.1.77); K00573 protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77]
protein-L-isoaspartate O-methyltransferase n=1 Tax=Methylococcus capsulatus RepID=UPI0002DD79DB
SCNpilot_expt_500_p_scaffold_232_22
unknown

Not on your lists

22516..23991
DNA (1476bp) protein (492aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_232_23
Candidatus Paracaedibacter acanthamoebae, Candidatus Paracaedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24067..24636
DNA (570bp) protein (190aa)
Uncharacterized protein {ECO:0000313|EMBL:AIK96168.1}; TaxID=91604 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Candidatus Paracaedibacter.;" source="Candidatus Paracaedibacter acanthamoebae.;"
SCNpilot_expt_500_p_scaffold_232_24
unknown

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comp(24722..25105)
DNA (384bp) protein (128aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_232_25
unknown

Not on your lists

25311..25583
DNA (273bp) protein (91aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_232_26
unknown

Not on your lists

25682..26257
DNA (576bp) protein (192aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_232_27
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26254..27183)
DNA (930bp) protein (310aa)
UPF0176 protein Mfla_2319 n=1 Tax=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) RepID=Y2319_METFK rbh
UPF0176 protein IM40_01200 {ECO:0000256|HAMAP-Rule:MF_00469}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
rhodanese-like protein; K07146 UPF0176 protein rbh
SCNpilot_expt_500_p_scaffold_232_28
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27411..27614)
DNA (204bp) protein (68aa)
FeS assembly protein IscX {ECO:0000313|EMBL:AIL12452.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
Protein containing DUF528 id=2439376 bin=GWA1_Alphaproteobacteria_45_9 species=Ralstonia sp. PBA genus=Ralstonia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA1_Alphaproteobacteria_45_9 organism_group=Alphaproteobacteria organism_desc=Good marker genes; small
hypothetical protein
SCNpilot_expt_500_p_scaffold_232_29
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27618..27950)
DNA (333bp) protein (111aa)
2Fe-2S ferredoxin {ECO:0000313|EMBL:AIL12453.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
2Fe-2S ferredoxin id=2439379 bin=GWA1_Alphaproteobacteria_45_9 species=Candidatus Odyssella thessalonicensis genus=Candidatus Odyssella taxon_order=Rickettsiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA1_Alphaproteobacteria_45_9 organism_group=Alphaproteobacteria organism_desc=Good marker genes; small
fdx; 2Fe-2S ferredoxin; K04755 ferredoxin, 2Fe-2S
SCNpilot_expt_500_p_scaffold_232_30
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28031..29452)
DNA (1422bp) protein (474aa)
Deoxyribodipyrimidine photolyase (EC:4.1.99.3) rbh
Deoxyribodipyrimidine photolyase family protein n=1 Tax=Oceanibaculum indicum P24 RepID=K2JR25_9PROT rbh
Deoxyribodipyrimidine photolyase {ECO:0000313|EMBL:AIL12454.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
Displaying items 1-30 of 82 in total

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