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SCNpilot_expt_500_p_scaffold_2528

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_2528_1
Micavibrio aeruginosavorus, Micavibrio, Alphaproteobacteria, Proteobacteria, Bacteria

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39..1574
DNA (1536bp) protein (512aa)
Protein related to deoxyribodipyrimidine photolyase n=1 Tax=Micavibrio aeruginosavorus EPB RepID=M4VH40_9PROT
Protein related to deoxyribodipyrimidine photolyase
Protein related to deoxyribodipyrimidine photolyase {ECO:0000313|EMBL:AGH98702.1}; TaxID=349215 species="Bacteria; Proteobacteria; Alphaproteobacteria; Micavibrio.;" source="Micavibrio aeruginosavorus EPB.;"
SCNpilot_expt_500_p_scaffold_2528_2
Flavobacterium sp. KMS, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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comp(1761..2252)
DNA (492bp) protein (164aa)
tryptophan-rich sensory protein n=1 Tax=Candidatus Odyssella thessalonicensis RepID=UPI000225ABD5
CrtK {ECO:0000313|EMBL:KIA99101.1}; TaxID=1566023 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. KMS.;"
tspO; tryptophan-rich sensory protein; K07185 tryptophan-rich sensory protein
SCNpilot_expt_500_p_scaffold_2528_3
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2508..3239)
DNA (732bp) protein (244aa)
Peptide chain release factor 2 {ECO:0000256|SAAS:SAAS00090452}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
protein chain release factor B id=4908854 bin=GWC2_Alphaproteobacteria_42_16 species=Candidatus Odyssella thessalonicensis genus=Candidatus Odyssella taxon_order=Rickettsiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
peptide chain release factor 2; K02836 peptide chain release factor 2
SCNpilot_expt_500_p_scaffold_2528_4
Thalassospira permensis, Thalassospira, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3618..6080)
DNA (2463bp) protein (821aa)
membrane carboxypeptidase/penicillin-binding protein; K05366 penicillin-binding protein 1A [EC:2.4.1.- 3.4.-.-]
Penicillin-binding protein 1A n=1 Tax=Thalassospira xiamenensis M-5 = DSM 17429 RepID=K2MJY0_9PROT rbh
Penicillin-binding protein 1A {ECO:0000313|EMBL:KEO58555.1}; TaxID=1353532 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Thalassospira.;" source="Thalassospira permensis NBRC 106175.;"
SCNpilot_expt_500_p_scaffold_2528_5
Nitrospirillum amazonense, Nitrospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6177..8000)
DNA (1824bp) protein (608aa)
30S ribosomal protein S1 n=1 Tax=Azospirillum amazonense Y2 RepID=G1XYN4_9PROT
30S ribosomal protein S1 {ECO:0000256|PIRNR:PIRNR002111}; TaxID=1003237 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Nitrospirillum.;" source="Nitrospirillum amazonense Y2.;"
rpsA; 30S ribosomal subunit protein S1
SCNpilot_expt_500_p_scaffold_2528_6
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8064..8705)
DNA (642bp) protein (214aa)
Cytidylate kinase {ECO:0000256|HAMAP-Rule:MF_00238}; Short=CK {ECO:0000256|HAMAP-Rule:MF_00238};; EC=2.7.4.25 {ECO:0000256|HAMAP-Rule:MF_00238};; Cytidine monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_00238}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
cmk; cytidylate kinase (EC:2.7.4.14); K00945 cytidylate kinase [EC:2.7.4.14]
Cytidylate kinase n=1 Tax=Thalassospira xiamenensis M-5 = DSM 17429 RepID=K2MAA8_9PROT
SCNpilot_expt_500_p_scaffold_2528_7
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8856..9164
DNA (309bp) protein (103aa)
Uncharacterized protein n=2 Tax=Rhodospirillum rubrum RepID=Q2RXP4_RHORT
Uncharacterized protein {ECO:0000313|EMBL:AIL12929.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_2528_8
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9386..10432
DNA (1047bp) protein (349aa)
UDP-phosphate alpha-N-acetylglucosaminephosphotransferase (EC:2.7.8.-)
Uncharacterized protein {ECO:0000313|EMBL:AIL12928.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
WecA: putative undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase id=3202357 bin=GWA1_Alphaproteobacteria_45_9 species=Desulfobacula toluolica genus=Desulfobacula taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA1_Alphaproteobacteria_45_9 organism_group=Alphaproteobacteria organism_desc=Good marker genes; small
SCNpilot_expt_500_p_scaffold_2528_9
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10443..11165
DNA (723bp) protein (241aa)
Zinc import ATP-binding protein ZnuC {ECO:0000256|HAMAP-Rule:MF_01725}; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01725};; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
znuC; high-affinity zinc transport system ATP-binding protein; K09817 zinc transport system ATP-binding protein [EC:3.6.3.-]
High-affinity zinc transport system ATP-binding protein n=1 Tax=Dickeya dadantii (strain 3937) RepID=E0SAW9_DICD3
SCNpilot_expt_500_p_scaffold_2528_10
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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11165..11959
DNA (795bp) protein (265aa)
High-affinity zinc transporter membrane component n=2 Tax=Providencia alcalifaciens RepID=B6XI20_9ENTR
Uncharacterized protein {ECO:0000313|EMBL:AIL12926.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
znuB; high-affinity zinc transporter membrane protein; K09816 zinc transport system permease protein
SCNpilot_expt_500_p_scaffold_2528_11
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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12263..12457
DNA (195bp) protein (65aa)
UPF0235 protein IM40_04415 {ECO:0000256|HAMAP-Rule:MF_00634}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
SCNpilot_expt_500_p_scaffold_2528_12
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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12441..12926
DNA (486bp) protein (162aa)
Putative Holliday junction resolvase {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086483}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086510};; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
putative Holliday junction resolvase; K07447 putative holliday junction resolvase [EC:3.1.-.-]
Putative Holliday junction resolvase n=1 Tax=Phaeospirillum fulvum MGU-K5 RepID=S9SE02_PHAFV
SCNpilot_expt_500_p_scaffold_2528_13
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(13066..13830)
DNA (765bp) protein (255aa)
3-deoxy-manno-octulosonate cytidylyltransferase {ECO:0000256|SAAS:SAAS00089008}; EC=2.7.7.38 {ECO:0000256|SAAS:SAAS00089008};; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
3-deoxy-manno-octulosonate cytidylyltransferase n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TQJ1_TISMK
kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase
SCNpilot_expt_500_p_scaffold_2528_14
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(13837..14481)
DNA (645bp) protein (215aa)
Putative uncharacterized protein n=1 Tax=Azospirillum amazonense Y2 RepID=G1XXI5_9PROT
Lysine decarboxylase {ECO:0000313|EMBL:KGM31774.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
hypothetical protein; K06966
SCNpilot_expt_500_p_scaffold_2528_15
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(14636..16213)
DNA (1578bp) protein (526aa)
Uncharacterized protein {ECO:0000313|EMBL:AIL12922.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
SCNpilot_expt_500_p_scaffold_2528_16
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(16369..20073)
DNA (3705bp) protein (1235aa)
Ribonucleotide-diphosphate reductase subunit alpha {ECO:0000313|EMBL:AIL12921.1}; EC=1.17.4.1 {ECO:0000313|EMBL:AIL12921.1};; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
Ribonucleotide-diphosphate reductase subunit alpha n=1 Tax=Oceanibaculum indicum P24 RepID=K2IFX0_9PROT rbh
nrdJ1; vitamin B12-dependent ribonucleotide reductase rbh
SCNpilot_expt_500_p_scaffold_2528_17
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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20174..22039
DNA (1866bp) protein (622aa)
ATP-binding cassette subfamily B n=1 Tax=Oceanibaculum indicum P24 RepID=K2JZ19_9PROT
Metal ABC transporter permease {ECO:0000313|EMBL:AIL12920.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components; K06147 ATP-binding cassette, subfamily B, bacterial
SCNpilot_expt_500_p_scaffold_2528_18
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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22060..23241
DNA (1182bp) protein (394aa)
Bcr/CflA subfamily drug resistance transporter n=2 Tax=Legionella longbeachae RepID=D1RJ70_LEGLO
Uncharacterized protein {ECO:0000313|EMBL:AIL12919.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
transporter of the major facilitator superfamily (MFS); K07552 MFS transporter, DHA1 family, bicyclomycin/chloramphenicol resistance protein
SCNpilot_expt_500_p_scaffold_2528_19
unknown

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23299..23409
DNA (111bp) protein (37aa)

This feature has no annotations

Displaying 19 items

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