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SCNpilot_expt_500_p_scaffold_7107

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_7107_1
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..1192
DNA (1191bp) protein (397aa)
Elongation factor Tu n=2 Tax=Phaeospirillum RepID=H8FNC6_PHAMO
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
tufB2; elongation factor Tu (EF-Tu)
SCNpilot_expt_500_p_scaffold_7107_2
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1140..1484
DNA (345bp) protein (115aa)
30S ribosomal protein S10 n=1 Tax=Acetobacter sp. CAG:977 RepID=R5PZ95_9PROT
30S ribosomal protein S10 {ECO:0000256|HAMAP-Rule:MF_00508}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
rpsJ; 30S ribosomal protein S10; K02946 small subunit ribosomal protein S10
SCNpilot_expt_500_p_scaffold_7107_3
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1494..2267
DNA (774bp) protein (258aa)
50S ribosomal protein L3 {ECO:0000256|HAMAP-Rule:MF_01325, ECO:0000256|RuleBase:RU003906}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
50S ribosomal protein L3 id=3298609 bin=GWC2_Alphaproteobacteria_42_16 species=unknown genus=Pseudovibrio taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
rplC; 50S ribosomal protein L3; K02906 large subunit ribosomal protein L3
SCNpilot_expt_500_p_scaffold_7107_4
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2283..2906
DNA (624bp) protein (208aa)
50S ribosomal protein L4 {ECO:0000256|HAMAP-Rule:MF_01328}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
50S ribosomal protein L4 id=3298607 bin=GWC2_Alphaproteobacteria_42_16 species=Rhodospirillum centenum genus=Rhodospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
rplD; 50S ribosomal protein L4; K02926 large subunit ribosomal protein L4
SCNpilot_expt_500_p_scaffold_7107_5
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2903..3226
DNA (324bp) protein (108aa)
50S ribosomal protein L23 n=1 Tax=Novispirillum itersonii RepID=UPI000377B3DF
50S ribosomal protein L23 {ECO:0000256|HAMAP-Rule:MF_01369}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
rplW; 50S ribosomal protein L23; K02892 large subunit ribosomal protein L23
SCNpilot_expt_500_p_scaffold_7107_6
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3228..4055
DNA (828bp) protein (276aa)
50S ribosomal protein L2 n=1 Tax=alpha proteobacterium BAL199 RepID=A8TZL2_9PROT
50S ribosomal protein L2 {ECO:0000256|HAMAP-Rule:MF_01320}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
rplB; 50S ribosomal protein L2; K02886 large subunit ribosomal protein L2
SCNpilot_expt_500_p_scaffold_7107_7
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4077..4355
DNA (279bp) protein (93aa)
30S ribosomal protein S19 n=1 Tax=Fodinicurvata sediminis RepID=UPI0003B6F186
30S ribosomal protein S19 {ECO:0000256|HAMAP-Rule:MF_00531}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
rpsS; 30S ribosomal protein S19; K02965 small subunit ribosomal protein S19
SCNpilot_expt_500_p_scaffold_7107_8
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4358..4738
DNA (381bp) protein (127aa)
50S ribosomal protein L22 n=1 Tax=Microvirga sp. WSM3557 RepID=I4YWB2_9RHIZ
50S ribosomal protein L22 {ECO:0000256|HAMAP-Rule:MF_01331, ECO:0000256|RuleBase:RU004008}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
50S ribosomal protein L22; K02890 large subunit ribosomal protein L22
SCNpilot_expt_500_p_scaffold_7107_9
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


4738..5412
DNA (675bp) protein (225aa)
30S ribosomal protein S3 (EC:3.1.26.5); K02982 small subunit ribosomal protein S3
30S ribosomal protein S3 n=1 Tax=Fodinicurvata sediminis RepID=UPI0003B63EF3
30S ribosomal protein S3 {ECO:0000256|HAMAP-Rule:MF_01309}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
SCNpilot_expt_500_p_scaffold_7107_10
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5430..5849
DNA (420bp) protein (140aa)
50S ribosomal protein L16 n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=RL16_RHOCS
50S ribosomal protein L16 {ECO:0000256|HAMAP-Rule:MF_01342, ECO:0000256|RuleBase:RU004414}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
rplP; 50S ribosomal protein L16; K02878 large subunit ribosomal protein L16
SCNpilot_expt_500_p_scaffold_7107_11
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


5854..6060
DNA (207bp) protein (69aa)
50S ribosomal protein L29 n=1 Tax=Erythrobacter litoralis (strain HTCC2594) RepID=RL29_ERYLH
50S ribosomal protein L29 {ECO:0000256|HAMAP-Rule:MF_00374}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
50S ribosomal protein L29; K02904 large subunit ribosomal protein L29
SCNpilot_expt_500_p_scaffold_7107_12
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


6072..6308
DNA (237bp) protein (79aa)
30S ribosomal protein S17 n=1 Tax=Novispirillum itersonii RepID=UPI0003744AA5
30S ribosomal protein S17 {ECO:0000256|HAMAP-Rule:MF_01345}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
rpsQ; 30S ribosomal protein S17; K02961 small subunit ribosomal protein S17
SCNpilot_expt_500_p_scaffold_7107_13
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


6326..6694
DNA (369bp) protein (123aa)
50S ribosomal protein L14 n=1 Tax=Ketogulonicigenium vulgare (strain WSH-001) RepID=F9Y5C7_KETVW
50S ribosomal protein L14 {ECO:0000256|HAMAP-Rule:MF_01367, ECO:0000256|RuleBase:RU003950}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
rplN; 50S ribosomal protein L14; K02874 large subunit ribosomal protein L14
Displaying 13 items

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