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SCNPILOT_CONT_500_P_Rotifera_33_75

SCNPILOT_EXPT_500_P_unknown_33_106
In projects: SCNPILOT_EXPT_500_P

Consensus taxonomy:

Metagenomic Context

Parent: SCNpilot_expt_500_p_UNK

Properties

Avg. coverage: 106.02 Longest contig: 163.80 Kbp Bin length: 65.70 Mbp GC content: 33.14 %
Contigs count: 9246 Features count: 74211 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 42 / 55 MC: 35 BSCG 20 / 51 MC: 11 ASCG 30 / 38 MC: 20
Displaying items 201-250 of 9246 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_expt_500_p_scaffold_803 40 34332 bp 34.15 113.90 46.23
SCNpilot_expt_500_p_scaffold_1144 40 41356 bp 32.74 112.14 39.45
SCNpilot_expt_500_p_scaffold_1400
Domain: Metazoa (62.5%)
40 28740 bp 35.88 113.53 64.96
SCNpilot_expt_500_p_scaffold_627 40 35206 bp 34.00 110.39 71.23
SCNpilot_expt_500_p_scaffold_1252
Domain: Metazoa (55%)
40 25356 bp 34.06 109.38 67.94
SCNpilot_expt_500_p_scaffold_1278 39 34052 bp 32.21 109.24 41.15
SCNpilot_expt_500_p_scaffold_946 39 35159 bp 32.93 108.88 42.66
SCNpilot_expt_500_p_scaffold_983 39 31632 bp 34.60 111.90 51.53
SCNpilot_expt_500_p_scaffold_2521 39 27811 bp 32.97 112.15 40.10
SCNpilot_expt_500_p_scaffold_1104 39 38456 bp 32.57 99.65 66.36
SCNpilot_expt_500_p_scaffold_2055 39 31494 bp 36.08 111.16 55.96
SCNpilot_expt_500_p_scaffold_4140 39 29887 bp 35.75 113.62 48.72
SCNpilot_expt_500_p_scaffold_1420 39 32934 bp 32.39 111.64 53.11
SCNpilot_expt_500_p_scaffold_2365 39 34693 bp 33.30 111.30 53.15
SCNpilot_expt_500_p_scaffold_834 39 32360 bp 32.99 114.87 45.26
SCNpilot_expt_500_p_scaffold_1939 39 30716 bp 33.09 110.11 59.51
SCNpilot_expt_500_p_scaffold_1701 39 33440 bp 33.30 108.07 40.97
SCNpilot_expt_500_p_scaffold_893 39 38662 bp 32.09 109.09 71.99
SCNpilot_expt_500_p_scaffold_651 39 33980 bp 34.47 109.61 46.81
SCNpilot_expt_500_p_scaffold_1003 38 28943 bp 35.95 110.41 58.93
SCNpilot_expt_500_p_scaffold_1272 38 39377 bp 32.95 110.34 37.19
SCNpilot_expt_500_p_scaffold_1056 38 21990 bp 33.13 110.99 59.28
SCNpilot_expt_500_p_scaffold_1646 38 34760 bp 32.98 110.87 44.42
SCNpilot_expt_500_p_scaffold_2348 38 20561 bp 33.75 116.04 61.19
SCNpilot_expt_500_p_scaffold_1665 38 27269 bp 34.03 109.36 59.46
SCNpilot_expt_500_p_scaffold_3529 38 27447 bp 34.70 111.94 41.73
SCNpilot_expt_500_p_scaffold_835 38 29476 bp 34.20 112.87 62.55
SCNpilot_expt_500_p_scaffold_1943
Domain: Metazoa (57.89%)
38 28387 bp 33.25 111.60 51.23
SCNpilot_expt_500_p_scaffold_4715 38 33149 bp 35.41 111.14 44.95
SCNpilot_expt_500_p_scaffold_1215 38 41675 bp 33.31 110.02 57.82
SCNpilot_expt_500_p_scaffold_2160 38 21835 bp 33.81 110.72 54.97
SCNpilot_expt_500_p_scaffold_626 38 36239 bp 32.06 98.58 76.61
SCNpilot_expt_500_p_scaffold_919 37 24937 bp 34.18 108.48 62.26
SCNpilot_expt_500_p_scaffold_925 37 28286 bp 33.67 109.52 59.15
SCNpilot_expt_500_p_scaffold_674 37 33128 bp 33.29 107.82 52.99
SCNpilot_expt_500_p_scaffold_2222
Domain: Metazoa (56.76%)
37 29935 bp 33.98 110.56 56.91
SCNpilot_expt_500_p_scaffold_1025 37 31044 bp 32.61 109.89 54.62
SCNpilot_expt_500_p_scaffold_709 37 31302 bp 33.11 113.91 42.65
SCNpilot_expt_500_p_scaffold_989 37 30096 bp 34.72 111.51 54.74
SCNpilot_expt_500_p_scaffold_998 37 38383 bp 33.00 112.09 47.42
SCNpilot_expt_500_p_scaffold_1871 37 35287 bp 32.80 112.27 41.40
SCNpilot_expt_500_p_scaffold_1872 37 28396 bp 34.87 111.07 44.10
SCNpilot_expt_500_p_scaffold_2309
Domain: Metazoa (51.35%)
37 27526 bp 35.49 113.82 68.19
SCNpilot_expt_500_p_scaffold_1373 37 25987 bp 32.21 110.54 43.75
SCNpilot_expt_500_p_scaffold_3758 37 23496 bp 34.64 113.53 59.31
SCNpilot_expt_500_p_scaffold_2337 37 27384 bp 34.78 113.59 61.93
SCNpilot_expt_500_p_scaffold_1408 37 28046 bp 32.09 110.42 47.78
SCNpilot_expt_500_p_scaffold_2664 37 20402 bp 33.54 108.45 59.02
SCNpilot_expt_500_p_scaffold_2929
Domain: Metazoa (51.35%)
37 33774 bp 33.13 113.39 51.12
SCNpilot_expt_500_p_scaffold_886 37 26508 bp 35.46 112.98 61.07
Displaying items 201-250 of 9246 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.