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SCNPILOT_CONT_500_P_Rotifera_33_75

SCNPILOT_EXPT_500_P_unknown_33_106
In projects: SCNPILOT_EXPT_500_P

Consensus taxonomy:

Metagenomic Context

Parent: SCNpilot_expt_500_p_UNK

Properties

Avg. coverage: 106.02 Longest contig: 163.80 Kbp Bin length: 65.70 Mbp GC content: 33.14 %
Contigs count: 9246 Features count: 74211 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 42 / 55 MC: 35 BSCG 20 / 51 MC: 11 ASCG 30 / 38 MC: 20
Displaying items 8551-8600 of 9246 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_expt_500_p_scaffold_25295
Species: Adineta vaga (50%)
2 2079 bp 34.25 108.35 89.03
SCNpilot_expt_500_p_scaffold_22911 4 3149 bp 36.61 111.86 89.08
SCNpilot_expt_500_p_scaffold_54557
Species: Albugo laibachii (100%)
1 1044 bp 34.67 49.81 89.08
SCNpilot_expt_500_p_scaffold_41417
Species: Adineta vaga (50%)
2 1323 bp 31.90 86.36 89.12
SCNpilot_expt_500_p_scaffold_11898 3 3905 bp 32.98 109.99 89.12
SCNpilot_expt_500_p_scaffold_46409
Species: Adineta vaga (100%)
1 1198 bp 34.81 99.12 89.15
SCNpilot_expt_500_p_scaffold_7230
Class: Bdelloidea (66.67%)
3 5631 bp 30.30 97.54 89.18
SCNpilot_expt_500_p_scaffold_53846
Species: Adineta vaga (50%)
2 1056 bp 30.87 66.76 89.20
SCNpilot_expt_500_p_scaffold_26458 2 1994 bp 29.39 96.79 89.22
SCNpilot_expt_500_p_scaffold_47223 1 1180 bp 35.00 87.29 89.24
SCNpilot_expt_500_p_scaffold_8410
Domain: Metazoa (50%)
8 5036 bp 36.06 108.87 89.24
SCNpilot_expt_500_p_scaffold_21439 2 2410 bp 27.43 104.46 89.25
SCNpilot_expt_500_p_scaffold_55066 2 1035 bp 36.43 105.07 89.28
SCNpilot_expt_500_p_scaffold_3745 9 8888 bp 34.18 105.96 89.28
SCNpilot_expt_500_p_scaffold_6830 3 5857 bp 28.79 50.79 89.28
SCNpilot_expt_500_p_scaffold_18491 3 2742 bp 30.45 109.41 89.28
SCNpilot_expt_500_p_scaffold_5041 2 7242 bp 28.75 51.64 89.31
SCNpilot_expt_500_p_scaffold_5830 6 6549 bp 33.01 50.81 89.33
SCNpilot_expt_500_p_scaffold_24198 4 3476 bp 31.53 110.11 89.33
SCNpilot_expt_500_p_scaffold_2215 14 15172 bp 33.09 105.61 89.36
SCNpilot_expt_500_p_scaffold_36019
Species: Adineta vaga (50%)
2 1504 bp 32.91 56.52 89.36
SCNpilot_expt_500_p_scaffold_6374
Species: Adineta vaga (66.67%)
6 6130 bp 30.15 46.90 89.36
SCNpilot_expt_500_p_scaffold_8485
Species: Naegleria gruberi (50%)
2 4998 bp 35.35 98.59 89.44
SCNpilot_expt_500_p_scaffold_33249 1 1620 bp 23.89 206.94 89.44
SCNpilot_expt_500_p_scaffold_61263
Species: Chromohalobacter salexigens (50%)
2 1308 bp 39.22 93.46 89.45
SCNpilot_expt_500_p_scaffold_8930
Class: Bdelloidea (57.14%)
7 4829 bp 28.83 57.41 89.46
SCNpilot_expt_500_p_scaffold_1364 10 18762 bp 31.30 52.11 89.46
SCNpilot_expt_500_p_scaffold_13820
Species: Nasonia vitripennis (50%)
2 3474 bp 31.92 104.85 89.46
SCNpilot_expt_500_p_scaffold_10049 4 6360 bp 34.29 101.38 89.48
SCNpilot_expt_500_p_scaffold_30767
Species: Tetranychus urticae (50%)
2 1740 bp 31.84 105.60 89.48
SCNpilot_expt_500_p_scaffold_25594
Species: Adineta vaga (50%)
2 2058 bp 32.22 94.63 89.50
SCNpilot_expt_500_p_scaffold_8498
Domain: Metazoa (66.67%)
6 4993 bp 30.44 112.41 89.53
SCNpilot_expt_500_p_scaffold_3017
Species: Adineta vaga (50%)
6 10320 bp 34.16 45.74 89.56
SCNpilot_expt_500_p_scaffold_20395 3 4207 bp 36.04 98.65 89.57
SCNpilot_expt_500_p_scaffold_523
Domain: Metazoa (57.89%)
19 41212 bp 30.97 107.75 89.58
SCNpilot_expt_500_p_scaffold_32347
Species: Philodina roseola (100%)
1 1661 bp 33.90 50.87 89.58
SCNpilot_expt_500_p_scaffold_767 6 29643 bp 33.31 50.88 89.63
SCNpilot_expt_500_p_scaffold_21881 3 2366 bp 31.95 113.06 89.65
SCNpilot_expt_500_p_scaffold_2312 10 12234 bp 32.60 108.63 89.65
SCNpilot_expt_500_p_scaffold_9021
Domain: Metazoa (71.43%)
7 8301 bp 30.77 97.82 89.70
SCNpilot_expt_500_p_scaffold_15255
Domain: Metazoa (66.67%)
3 3207 bp 40.26 115.53 89.71
SCNpilot_expt_500_p_scaffold_32121
Species: Salpingoeca rosetta (50%)
2 1672 bp 31.64 98.98 89.71
SCNpilot_expt_500_p_scaffold_31895 2 1682 bp 28.83 93.04 89.71
SCNpilot_expt_500_p_scaffold_11473 4 4017 bp 36.59 95.78 89.77
SCNpilot_expt_500_p_scaffold_28245
Species: Philodina roseola (100%)
3 1878 bp 32.85 94.65 89.78
SCNpilot_expt_500_p_scaffold_12149
Species: Adineta vaga (60%)
5 4304 bp 32.04 104.21 89.78
SCNpilot_expt_500_p_scaffold_17437
Species: Burkholderia sp. CCGE1002 (50%)
2 2880 bp 31.60 91.93 89.79
SCNpilot_expt_500_p_scaffold_31593
Species: Adineta vaga (50%)
2 1697 bp 33.53 105.77 89.81
SCNpilot_expt_500_p_scaffold_45045
Species: Adineta vaga (50%)
2 1229 bp 31.49 60.82 89.83
SCNpilot_expt_500_p_scaffold_1738 8 16405 bp 36.45 108.38 89.84
Displaying items 8551-8600 of 9246 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.