ggKbase home page
Advanced Search
Search Help

SCNPILOT_CONT_500_P_Rotifera_33_75

SCNPILOT_EXPT_500_P_unknown_33_106
In projects: SCNPILOT_EXPT_500_P

Consensus taxonomy:

Metagenomic Context

Parent: SCNpilot_expt_500_p_UNK

Properties

Avg. coverage: 106.02 Longest contig: 163.80 Kbp Bin length: 65.70 Mbp GC content: 33.14 %
Contigs count: 9246 Features count: 74211 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 42 / 55 MC: 35 BSCG 20 / 51 MC: 11 ASCG 30 / 38 MC: 20
Displaying items 8601-8650 of 9246 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_expt_500_p_scaffold_16124
Domain: Metazoa (50%)
4 3309 bp 32.67 92.85 89.85
SCNpilot_expt_500_p_scaffold_12072
Class: Bdelloidea (66.67%)
3 3863 bp 30.34 105.62 89.93
SCNpilot_expt_500_p_scaffold_88794 4 1024 bp 31.93 68.12 89.94
SCNpilot_expt_500_p_scaffold_10911
Domain: Metazoa (75%)
4 7258 bp 36.77 99.75 89.94
SCNpilot_expt_500_p_scaffold_3172 11 10907 bp 30.26 107.80 89.94
SCNpilot_expt_500_p_scaffold_54528
Species: Philodina roseola (100%)
1 1044 bp 37.45 85.73 89.94
SCNpilot_expt_500_p_scaffold_23619 4 2211 bp 31.52 126.07 89.96
SCNpilot_expt_500_p_scaffold_33518
Species: Rhizophagus irregularis (50%)
2 1607 bp 35.72 109.05 89.98
SCNpilot_expt_500_p_scaffold_14367
Species: Rhizophagus irregularis (50%)
2 3364 bp 32.16 101.00 89.98
SCNpilot_expt_500_p_scaffold_54799
Species: Strigamia maritima (50%)
2 1040 bp 39.04 110.82 90.00
SCNpilot_expt_500_p_scaffold_14416
Class: Bdelloidea (57.14%)
7 3966 bp 33.33 102.18 90.02
SCNpilot_expt_500_p_scaffold_21525
Species: Crassostrea gigas (100%)
1 2402 bp 28.31 200.56 90.05
SCNpilot_expt_500_p_scaffold_48118
Species: Lottia gigantea (100%)
1 1162 bp 32.36 107.57 90.10
SCNpilot_expt_500_p_scaffold_29923
Species: Naegleria gruberi (100%)
1 1783 bp 36.79 90.16 90.19
SCNpilot_expt_500_p_scaffold_45270 1 1224 bp 31.37 115.40 90.20
SCNpilot_expt_500_p_scaffold_7285 5 8230 bp 31.58 92.25 90.22
SCNpilot_expt_500_p_scaffold_1094 13 21399 bp 32.27 102.07 90.23
SCNpilot_expt_500_p_scaffold_7773 4 5333 bp 34.52 104.54 90.23
SCNpilot_expt_500_p_scaffold_32595 2 1649 bp 32.14 105.37 90.24
SCNpilot_expt_500_p_scaffold_56426 3 1622 bp 35.94 92.32 90.26
SCNpilot_expt_500_p_scaffold_56314
Species: Selaginella moellendorffii (50%)
2 1017 bp 35.40 88.50 90.27
SCNpilot_expt_500_p_scaffold_9027
Species: Adineta vaga (50%)
2 4787 bp 31.59 114.42 90.31
SCNpilot_expt_500_p_scaffold_7729
Domain: Metazoa (50%)
4 8451 bp 31.55 117.74 90.31
SCNpilot_expt_500_p_scaffold_7782
Phylum: Chordata (50%)
8 5328 bp 32.56 106.79 90.32
SCNpilot_expt_500_p_scaffold_10035
Species: Philodina roseola (66.67%)
3 4441 bp 33.69 95.59 90.32
SCNpilot_expt_500_p_scaffold_29080
Species: Halomonas salina (50%)
4 1830 bp 35.03 109.70 90.33
SCNpilot_expt_500_p_scaffold_6020 8 6384 bp 40.04 95.98 90.37
SCNpilot_expt_500_p_scaffold_22542
Species: Pseudogymnoascus pannorum (50%)
2 2307 bp 30.21 89.08 90.38
SCNpilot_expt_500_p_scaffold_34141 1 1580 bp 31.71 105.54 90.38
SCNpilot_expt_500_p_scaffold_35670 3 1516 bp 31.86 90.37 90.44
SCNpilot_expt_500_p_scaffold_13749
Species: Arion vulgaris (100%)
2 3489 bp 35.63 109.06 90.46
SCNpilot_expt_500_p_scaffold_42151 2 1303 bp 37.38 93.44 90.48
SCNpilot_expt_500_p_scaffold_2966 8 11350 bp 29.52 105.79 90.50
SCNpilot_expt_500_p_scaffold_47935 3 2167 bp 37.84 103.71 90.54
SCNpilot_expt_500_p_scaffold_3238 13 17096 bp 31.32 118.20 90.57
SCNpilot_expt_500_p_scaffold_27826
Species: Fibrisoma limi (66.67%)
3 1904 bp 31.78 41.75 90.60
SCNpilot_expt_500_p_scaffold_25004
Species: Oryzias latipes (50%)
2 2099 bp 31.25 104.45 90.61
SCNpilot_expt_500_p_scaffold_41733
Species: Adineta vaga (50%)
2 1314 bp 35.16 97.79 90.64
SCNpilot_expt_500_p_scaffold_35449
Species: R_Bdellovibrionales_40_15 (66.67%)
3 1525 bp 37.97 91.97 90.69
SCNpilot_expt_500_p_scaffold_7888 5 5831 bp 34.09 95.27 90.70
SCNpilot_expt_500_p_scaffold_17220 3 2907 bp 36.98 105.35 90.71
SCNpilot_expt_500_p_scaffold_26461
Phylum: Ascomycota (50%)
4 1994 bp 33.15 119.61 90.72
SCNpilot_expt_500_p_scaffold_12696
Species: BJP_IG2158_Anaerolineales_38_74 (50%)
2 3991 bp 34.65 97.78 90.73
SCNpilot_expt_500_p_scaffold_18162
Domain: Metazoa (50%)
4 2784 bp 36.06 114.40 90.73
SCNpilot_expt_500_p_scaffold_47423
Species: Adineta vaga (66.67%)
3 1537 bp 31.42 110.12 90.76
SCNpilot_expt_500_p_scaffold_19819
Phylum: Annelida (50%)
4 2583 bp 38.87 100.17 90.82
SCNpilot_expt_500_p_scaffold_50612
Species: Philodina roseola (50%)
2 1113 bp 36.03 82.21 90.84
SCNpilot_expt_500_p_scaffold_1668
Domain: Metazoa (80%)
10 15344 bp 36.18 106.70 90.84
SCNpilot_expt_500_p_scaffold_20293
Species: Adineta vaga (100%)
3 3504 bp 29.99 167.24 90.84
SCNpilot_expt_500_p_scaffold_12195
Domain: Bacteria (66.67%)
3 3837 bp 38.15 94.54 90.85
Displaying items 8601-8650 of 9246 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.