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SCNpilot_expt_500_p_scaffold_601

Search features with annotation key words

Displaying items 1-30 of 83 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_601_1
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..1167
DNA (1167bp) protein (389aa)
6-phosphofructokinase (EC:2.7.1.90); K00850 6-phosphofructokinase [EC:2.7.1.11] rbh
6-phosphofructokinase n=1 Tax=Thiobacillus thioparus RepID=UPI0003740863 rbh
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_500_p_scaffold_601_2
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1217..1462
DNA (246bp) protein (82aa)
hypothetical protein id=12493577 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_500_p_scaffold_601_3
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1525..3141
DNA (1617bp) protein (539aa)
hppA; membrane-bound proton-translocating pyrophosphatase (EC:3.6.1.1); K15987 K(+)-stimulated pyrophosphate-energized sodium pump [EC:3.6.1.1]
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003638A2B
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_500_p_scaffold_601_4
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3138..3344
DNA (207bp) protein (69aa)
hppA; pyrophosphate-energized proton pump (EC:3.6.1.1)
K(+)-insensitive pyrophosphate-energized proton pump id=1327863 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_500_p_scaffold_601_5
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3440..3646
DNA (207bp) protein (69aa)
hypothetical protein id=12493575 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_500_p_scaffold_601_6
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3712..4242
DNA (531bp) protein (177aa)
membrane protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036626DA
outer membrane lipoprotein carrier protein LolA; K03634 outer membrane lipoprotein carrier protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_500_p_scaffold_601_7
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4668..5681
DNA (1014bp) protein (338aa)
ATPase AAA n=1 Tax=Thiobacillus thioparus RepID=UPI00037041EC
recombination factor protein RarA; K07478 putative ATPase
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_500_p_scaffold_601_8
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5777..6193
DNA (417bp) protein (139aa)
Putative uncharacterized protein id=1327872 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_500_p_scaffold_601_9
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6206..6886
DNA (681bp) protein (227aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037E7D76 rbh
hypothetical protein rbh
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_500_p_scaffold_601_10
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6984..7454
DNA (471bp) protein (157aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036D4ECF
hypothetical protein; K09004 hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_500_p_scaffold_601_11
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7442..10213)
DNA (2772bp) protein (924aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036B7176 rbh
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_500_p_scaffold_601_12
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10602..11603
DNA (1002bp) protein (334aa)
putative periplasmic protease; K04774 serine protease SohB [EC:3.4.21.-] id=12493565 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
putative periplasmic protease; K04774 serine protease SohB [EC:3.4.21.-]
Serine protease SohB {ECO:0000313|EMBL:AAZ98582.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_500_p_scaffold_601_13
GWA2_Rhodocyclales_65_20_curated, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11791..14154
DNA (2364bp) protein (788aa)
Type I site-specific deoxyribonuclease n=1 Tax=Thiocapsa marina 5811 RepID=F9U565_9GAMM rbh
helicase, type I site-specific restriction-modification system restriction subunit rbh
Tax=GWA2_Rhodocyclales_65_20_curated
SCNpilot_expt_500_p_scaffold_601_14
GWA2_Rhodocyclales_65_20_curated, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14157..14999
DNA (843bp) protein (281aa)
DNA-binding protein n=1 Tax=Desulfovibrio sp. Dsv1 RepID=UPI0003B7AC77
hypothetical protein rbh
Tax=GWA2_Rhodocyclales_65_20_curated
SCNpilot_expt_500_p_scaffold_601_15
Thiocapsa marina, Thiocapsa, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15003..16205
DNA (1203bp) protein (401aa)
Site-specific DNA-methyltransferase (Adenine-specific) {ECO:0000313|EMBL:EGV20289.1}; EC=2.1.1.72 {ECO:0000313|EMBL:EGV20289.1};; TaxID=768671 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiocapsa.;" source="Thiocapsa marina 5811.;"
adenine-specific DNA-methyltransferase (EC:2.1.1.72); K03427 type I restriction enzyme M protein [EC:2.1.1.72]
Site-specific DNA-methyltransferase (Adenine-specific) n=1 Tax=Thiocapsa marina 5811 RepID=F9U566_9GAMM rbh
SCNpilot_expt_500_p_scaffold_601_16
Bordetella petrii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16354..18555
DNA (2202bp) protein (734aa)
Type I restriction-modification system, S subunit n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9I6S0_BORPD
type I restriction-modification system subunit S
Type I restriction-modification system, S subunit {ECO:0000313|EMBL:CAP44335.1}; TaxID=340100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448).;"
SCNpilot_expt_500_p_scaffold_601_17
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18712..19665
DNA (954bp) protein (318aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00035C110A rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ97439.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_500_p_scaffold_601_18
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20117..21247)
DNA (1131bp) protein (377aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037551CD
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_500_p_scaffold_601_19
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21222..21860)
DNA (639bp) protein (213aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037551CD
Uncharacterized protein {ECO:0000313|EMBL:GAO37019.1}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_601_20
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22055..22477)
DNA (423bp) protein (141aa)
twitching motility protein PilT n=1 Tax=Thiobacillus thioparus RepID=UPI000378EA20
PilT protein domain-containing protein; K07062
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_500_p_scaffold_601_21
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22474..22728)
DNA (255bp) protein (85aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000361D831
prevent-host-death family protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_500_p_scaffold_601_22
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22818..23072)
DNA (255bp) protein (85aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037B159A
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_500_p_scaffold_601_23
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23198..23800
DNA (603bp) protein (201aa)
SOS-response transcriptional repressor, LexA (EC:3.4.21.88); K01356 repressor LexA [EC:3.4.21.88] rbh
umuDC operon protein-like protein n=1 Tax=Thiobacillus thioparus RepID=UPI000378691D rbh
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_500_p_scaffold_601_24
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24010..24846
DNA (837bp) protein (279aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00035EB2DE rbh
DNA topoisomerase I:restriction endonuclease; K07448 restriction system protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_500_p_scaffold_601_25
unknown

Not on your lists

comp(24813..24947)
DNA (135bp) protein (45aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_601_26
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25109..28156
DNA (3048bp) protein (1016aa)
Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(S) n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SIU2_THIDA rbh
PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase rbh
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_500_p_scaffold_601_27
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28260..28877
DNA (618bp) protein (206aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000363CDE2 rbh
nitroreductase
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_500_p_scaffold_601_28
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28987..29580
DNA (594bp) protein (198aa)
Uncharacterized protein id=1324492 bin=GWE1_T_denit_62_9 species=Azoarcus sp. genus=Azoarcus taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_500_p_scaffold_601_29
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29624..29875
DNA (252bp) protein (84aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003690C6F
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_500_p_scaffold_601_30
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29996..30484
DNA (489bp) protein (163aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000371C6BA rbh
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
Displaying items 1-30 of 83 in total

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