ggKbase home page

SCNpilot_expt_500_p_scaffold_903

Search features with annotation key words

Displaying items 1-30 of 86 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_903_1
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..901)
DNA (900bp) protein (300aa)
RNAse E (EC:3.1.4.-); K08300 ribonuclease E [EC:3.1.26.12]
Ribonuclease E {ECO:0000256|HAMAP-Rule:MF_00970}; Short=RNase E {ECO:0000256|HAMAP-Rule:MF_00970};; EC=3.1.26.12 {ECO:0000256|HAMAP-Rule:MF_00970};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
ribonuclease E n=1 Tax=Thiobacillus thioparus RepID=UPI00036E0F99
SCNpilot_expt_500_p_scaffold_903_2
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1190..2158
DNA (969bp) protein (323aa)
ribosomal large subunit pseudouridine synthase C (EC:5.4.99.-); K06179 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
ribosomal large subunit pseudouridine synthase C n=1 Tax=Thiobacillus thioparus RepID=UPI000368ADF0 rbh
SCNpilot_expt_500_p_scaffold_903_3
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2142..2798
DNA (657bp) protein (219aa)
putative hydrolase; K01091 phosphoglycolate phosphatase [EC:3.1.3.18] id=12493111 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
putative hydrolase; K01091 phosphoglycolate phosphatase [EC:3.1.3.18] rbh
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_500_p_scaffold_903_4
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2777..3127
DNA (351bp) protein (117aa)
(2Fe-2S)-binding protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036F4CD3
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_500_p_scaffold_903_5
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3138..4088
DNA (951bp) protein (317aa)
protease; K04773 protease IV [EC:3.4.21.-] rbh
peptidase S49 n=1 Tax=Thiobacillus thioparus RepID=UPI00037D5B5B rbh
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_500_p_scaffold_903_6
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4085..4294
DNA (210bp) protein (70aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003705332
transcriptional antiterminator, Rof
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_500_p_scaffold_903_7
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4306..5013)
DNA (708bp) protein (236aa)
transmembrane protein; K07056 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] rbh
S-adenosylmethionine-dependent methyltransferase n=1 Tax=Thiobacillus thioparus RepID=UPI0003774B1D rbh
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_500_p_scaffold_903_8
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4989..5618)
DNA (630bp) protein (210aa)
septum formation protein Maf n=1 Tax=Thiobacillus thioparus RepID=UPI00036F81F4 rbh
Maf-like protein; K06287 septum formation protein rbh
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_500_p_scaffold_903_9
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5615..7462)
DNA (1848bp) protein (616aa)
pyruvate carboxylase subunit B (EC:4.1.1.3); K01960 pyruvate carboxylase subunit B [EC:6.4.1.1] rbh
pyruvate carboxylase n=1 Tax=Thiobacillus thioparus RepID=UPI000374C5DF rbh
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_500_p_scaffold_903_10
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7464..8882)
DNA (1419bp) protein (473aa)
pyruvate carboxylase subunit A (EC:6.3.4.14); K01959 pyruvate carboxylase subunit A [EC:6.4.1.1] rbh
acetyl-CoA carboxylase subunit alpha n=1 Tax=Thiobacillus thioparus RepID=UPI0003618A3C rbh
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_500_p_scaffold_903_11
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


9320..9499
DNA (180bp) protein (60aa)
50S ribosomal protein L32 id=1360988 bin=GWE1_T_denit_62_9 species=unknown genus=unknown taxon_order=Methylophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
rpmF; 50S ribosomal protein L32; K02911 large subunit ribosomal protein L32
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_500_p_scaffold_903_12
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9568..10587
DNA (1020bp) protein (340aa)
putative glycerol-3-phosphate acyltransferase PlsX; K03621 glycerol-3-phosphate acyltransferase PlsX [EC:2.3.1.15] rbh
phosphate acyltransferase n=1 Tax=Thiobacillus denitrificans RepID=UPI0003604250 rbh
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_500_p_scaffold_903_13
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10584..11543
DNA (960bp) protein (320aa)
3-oxoacyl-(acyl carrier protein) synthase III (EC:2.3.1.41); K00648 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] rbh
3-oxoacyl-ACP synthase n=1 Tax=Thiobacillus thioparus RepID=UPI000372375F rbh
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_500_p_scaffold_903_14
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11556..12479
DNA (924bp) protein (308aa)
[Acyl-carrier-protein] S-malonyltransferase (EC:2.3.1.39); K00645 [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] rbh
Malonyl CoA-acyl carrier protein transacylase id=1359362 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb rbh
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_500_p_scaffold_903_15
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12491..13261
DNA (771bp) protein (257aa)
3-oxoacyl-[acyl-carrier-protein] reductase (EC:1.1.1.100); K00059 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] rbh
3-ketoacyl-ACP reductase n=1 Tax=Thiobacillus thioparus RepID=UPI00035F4B51 rbh
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_500_p_scaffold_903_16
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13334..13567
DNA (234bp) protein (78aa)
Acyl carrier protein id=1359360 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Acyl carrier protein; K02078 acyl carrier protein
Acyl carrier protein {ECO:0000256|HAMAP-Rule:MF_01217, ECO:0000256|RuleBase:RU003545}; Short=ACP {ECO:0000256|HAMAP-Rule:MF_01217};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_500_p_scaffold_903_17
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13735..14967
DNA (1233bp) protein (411aa)
3-oxoacyl-(acyl carrier protein) synthase II (EC:2.3.1.41); K09458 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] rbh
3-oxoacyl-ACP synthase n=1 Tax=Thiobacillus thioparus RepID=UPI00037BD0B0 rbh
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_500_p_scaffold_903_18
unknown

Not on your lists

15091..15234
DNA (144bp) protein (48aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036069FE
SCNpilot_expt_500_p_scaffold_903_19
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15231..16040
DNA (810bp) protein (270aa)
aminodeoxychorismate lyase apoprotein (EC:4.1.3.38); K02619 4-amino-4-deoxychorismate lyase [EC:4.1.3.38]
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036DDD4B rbh
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_500_p_scaffold_903_20
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16024..17022
DNA (999bp) protein (333aa)
aminodeoxychorismate lyase n=1 Tax=Thiobacillus thioparus RepID=UPI00037F7E7C rbh
aminodeoxychorismate lyase; K07082 UPF0755 protein rbh
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_500_p_scaffold_903_21
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17019..17630
DNA (612bp) protein (204aa)
thymidylate kinase (EC:2.7.4.9); K00943 dTMP kinase [EC:2.7.4.9] rbh
thymidylate kinase n=1 Tax=Thiobacillus thioparus RepID=UPI00035D462D rbh
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_500_p_scaffold_903_22
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17627..18610
DNA (984bp) protein (328aa)
DNA polymerase III subunit delta' (EC:2.7.7.7); K02341 DNA polymerase III subunit delta' [EC:2.7.7.7] rbh
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00038084FA rbh
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_500_p_scaffold_903_23
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18623..18994
DNA (372bp) protein (124aa)
pilus assembly protein PilZ n=1 Tax=Thiobacillus thioparus RepID=UPI00035E8156
type IV pilus assembly protein PilZ; K02676 type IV pilus assembly protein PilZ
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_500_p_scaffold_903_24
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19021..19791
DNA (771bp) protein (257aa)
TatD-related deoxyribonuclease; K03424 TatD DNase family protein [EC:3.1.21.-] rbh
DNAase n=1 Tax=Thiobacillus thioparus RepID=UPI00038283A3 rbh
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_500_p_scaffold_903_25
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19905..20408)
DNA (504bp) protein (168aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036A89E0 rbh
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_500_p_scaffold_903_26
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20521..21636)
DNA (1116bp) protein (372aa)
molecular chaperone DnaJ n=1 Tax=Thiobacillus thioparus RepID=UPI0003715E7E rbh
molecular chaperone protein DnaJ; K03686 molecular chaperone DnaJ rbh
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_500_p_scaffold_903_27
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21725..23080)
DNA (1356bp) protein (452aa)
molecular chaperone DnaK n=1 Tax=Thiobacillus thioparus RepID=UPI000366C4EA
molecular chaperone protein DnaK; K04043 molecular chaperone DnaK
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_500_p_scaffold_903_28
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23080..23211)
DNA (132bp) protein (44aa)
molecular chaperone protein DnaK; K04043 molecular chaperone DnaK id=12493086 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
molecular chaperone protein DnaK; K04043 molecular chaperone DnaK
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_500_p_scaffold_903_29
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23282..23803)
DNA (522bp) protein (174aa)
molecular chaperone GrpE n=1 Tax=Thiobacillus thioparus RepID=UPI00036A8592 rbh
molecular chaperone protein GrpE; K03687 molecular chaperone GrpE
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_500_p_scaffold_903_30
unknown

Not on your lists

24182..24379
DNA (198bp) protein (66aa)

This feature has no annotations

Displaying items 1-30 of 86 in total

View Taxonomy