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SCNpilot_expt_500_p_scaffold_1166

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_1166_1
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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2..1252
DNA (1251bp) protein (417aa)
tRNA N6-adenosine threonylcarbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_01445, ECO:0000256|SAAS:SAAS00018957}; EC=2.3.1.234 {ECO:0000256|HAMAP-Rule:MF_01445, ECO:0000256|SAAS:SAAS00182339};; N6-L-threonylcarbamoyladenine synthase {ECO:0000256|HAMAP-Rule:MF_01445}; t(6)A37 threonylcarbamoyladenosine biosynthesis protein TsaD {ECO:0000256|HAMAP-Rule:MF_01445}; tRNA threonylcarbamoyladenosine biosynthesis protein TsaD {ECO:0000256|HAMAP-Rule:MF_01445}; TaxID=1288494 species="Bacteria; Proteobacteria; Betapro
putative DNA-binding/iron metalloprotein/AP endonuclease (EC:3.4.24.57); K01409 O-sialoglycoprotein endopeptidase [EC:3.4.24.57] rbh
tRNA N6-adenosine threonylcarbamoyltransferase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DVD2_9PROT rbh
SCNpilot_expt_500_p_scaffold_1166_2
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1270..1878)
DNA (609bp) protein (203aa)
hypothetical protein; K08591 glycerol-3-phosphate acyltransferase PlsY [EC:2.3.1.15]
Glycerol-3-phosphate acyltransferase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DIV2_9PROT
Glycerol-3-phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; Acyl-PO4 G3P acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; Acyl-phosphate--glycerol-3-phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; G3P acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; Lysophosphatidic acid synthase {ECO:0000256|HAMAP-Rule:MF_01043}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
SCNpilot_expt_500_p_scaffold_1166_3
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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2183..2581
DNA (399bp) protein (133aa)
dihydroneopterin aldolase; K01633 dihydroneopterin aldolase [EC:4.1.2.25]
Dihydroneopterin aldolase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DKF2_9PROT
Dienelactone hydrolase {ECO:0000313|EMBL:KIO50107.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
SCNpilot_expt_500_p_scaffold_1166_4
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2713..3297)
DNA (585bp) protein (195aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DL02_9PROT
Uncharacterized protein {ECO:0000313|EMBL:CCU63283.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_1166_5
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3525..4232)
DNA (708bp) protein (236aa)
Orotidine 5'-phosphate decarboxylase {ECO:0000256|HAMAP-Rule:MF_01200, ECO:0000256|RuleBase:RU000512}; EC=4.1.1.23 {ECO:0000256|HAMAP-Rule:MF_01200, ECO:0000256|RuleBase:RU000512};; OMP decarboxylase {ECO:0000256|HAMAP-Rule:MF_01200}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
orotidine 5'-phosphate decarboxylase (EC:4.1.1.23); K01591 orotidine-5'-phosphate decarboxylase [EC:4.1.1.23] rbh
Orotidine 5'-phosphate decarboxylase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DVD6_9PROT rbh
SCNpilot_expt_500_p_scaffold_1166_6
unknown

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comp(4229..4321)
DNA (93bp) protein (31aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_1166_7
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(4318..4575)
DNA (258bp) protein (86aa)
Probable transmembrane protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DIV5_9PROT
Probable transmembrane protein {ECO:0000313|EMBL:CCU63286.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_1166_8
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(4718..5002)
DNA (285bp) protein (95aa)
Integration host factor subunit beta n=1 Tax=Nitrosospira sp. APG3 RepID=M5DKF5_9PROT
Integration host factor subunit beta {ECO:0000256|HAMAP-Rule:MF_00381, ECO:0000256|RuleBase:RU003941}; Short=IHF-beta {ECO:0000256|HAMAP-Rule:MF_00381};; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
integration host factor subunit beta; K05788 integration host factor subunit beta
SCNpilot_expt_500_p_scaffold_1166_9
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(5013..6725)
DNA (1713bp) protein (571aa)
30S ribosomal protein S1 n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y7A8_NITMU rbh
30S ribosomal protein S1 {ECO:0000256|PIRNR:PIRNR002111}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
rpsA; 30S ribosomal protein S1; K02945 small subunit ribosomal protein S1 rbh
SCNpilot_expt_500_p_scaffold_1166_10
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7048..7746)
DNA (699bp) protein (233aa)
Cytidylate kinase {ECO:0000256|HAMAP-Rule:MF_00238, ECO:0000313|EMBL:KIO49929.1}; Short=CK {ECO:0000256|HAMAP-Rule:MF_00238};; EC=2.7.4.25 {ECO:0000256|HAMAP-Rule:MF_00238, ECO:0000256|SAAS:SAAS00098295};; Cytidine monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_00238}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
cytidylate kinase (EC:2.7.4.14); K00945 cytidylate kinase [EC:2.7.4.14] rbh
Cytidylate kinase n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y7A7_NITMU rbh
SCNpilot_expt_500_p_scaffold_1166_11
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7834..9321)
DNA (1488bp) protein (496aa)
3-phosphoshikimate 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|RuleBase:RU000531}; EC=2.5.1.19 {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|RuleBase:RU000531};; 5-enolpyruvylshikimate-3-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00210}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
3-phosphoshikimate 1-carboxyvinyltransferase (EC:2.5.1.19); K00800 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19] rbh
3-phosphoshikimate 1-carboxyvinyltransferase n=1 Tax=Nitrosospira multiformis RepID=UPI0001A230BF rbh
SCNpilot_expt_500_p_scaffold_1166_12
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9712..10683
DNA (972bp) protein (324aa)
Cysteine synthase {ECO:0000256|RuleBase:RU003985, ECO:0000313|EMBL:KIO49931.1}; EC=2.5.1.47 {ECO:0000256|RuleBase:RU003985};; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
cysteine synthase A; K01738 cysteine synthase A [EC:2.5.1.47] rbh
Cysteine synthase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DVE2_9PROT rbh
SCNpilot_expt_500_p_scaffold_1166_13
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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10712..11635
DNA (924bp) protein (308aa)
Serine O-acetyltransferase (EC:2.3.1.30); K00640 serine O-acetyltransferase [EC:2.3.1.30] rbh
Serine acetyltransferase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DIV9_9PROT rbh
Serine acetyltransferase {ECO:0000313|EMBL:KIO49932.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
SCNpilot_expt_500_p_scaffold_1166_14
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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11784..12743
DNA (960bp) protein (320aa)
Sel1-like repeat n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y7A3_NITMU rbh
Sel1 repeat-containing protein; K07126 rbh
Sel1-like repeat {ECO:0000313|EMBL:ABB75368.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
SCNpilot_expt_500_p_scaffold_1166_15
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12841..14256
DNA (1416bp) protein (472aa)
dihydrolipoamide dehydrogenase (EC:1.8.1.4); K00382 dihydrolipoamide dehydrogenase [EC:1.8.1.4] rbh
Dihydrolipoamide dehydrogenase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DKC4_9PROT rbh
Dihydrolipoamide dehydrogenase {ECO:0000313|EMBL:KIO49933.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
SCNpilot_expt_500_p_scaffold_1166_16
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14420..14902
DNA (483bp) protein (161aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DIW2_9PROT
Membrane protein {ECO:0000313|EMBL:KIO49934.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_1166_17
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14991..15368
DNA (378bp) protein (126aa)
Invasion gene expression up-regulator, SirB n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y7A0_NITMU
invasion gene expression up-regulator SirB
Invasion gene expression up-regulator, SirB {ECO:0000313|EMBL:ABB75371.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
SCNpilot_expt_500_p_scaffold_1166_18
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15941..18277
DNA (2337bp) protein (779aa)
penicillin-binding protein 1A (EC:2.4.1.129); K05366 penicillin-binding protein 1A [EC:2.4.1.- 3.4.-.-] rbh
Multimodular transpeptidase-transglycosylase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DKC7_9PROT rbh
Penicillin-binding protein {ECO:0000313|EMBL:KIO49936.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
SCNpilot_expt_500_p_scaffold_1166_19
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18342..19304)
DNA (963bp) protein (321aa)
Delta-aminolevulinic acid dehydratase {ECO:0000256|RuleBase:RU000515}; EC=4.2.1.24 {ECO:0000256|RuleBase:RU000515};; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
delta-aminolevulinic acid dehydratase (EC:4.2.1.24); K01698 porphobilinogen synthase [EC:4.2.1.24] rbh
Delta-aminolevulinic acid dehydratase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DVF1_9PROT rbh
SCNpilot_expt_500_p_scaffold_1166_20
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19504..20232)
DNA (729bp) protein (243aa)
Probable GTP-binding protein EngB n=1 Tax=Nitrosospira sp. APG3 RepID=M5DIW6_9PROT rbh
Probable GTP-binding protein EngB {ECO:0000256|HAMAP-Rule:MF_00321}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
engB; ribosome biogenesis GTP-binding protein YsxC; K03978 GTP-binding protein rbh
Displaying 20 items

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