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SCNpilot_expt_500_p_scaffold_1328

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_1328_1
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(173..1336)
DNA (1164bp) protein (388aa)
Succinyl-diaminopimelate desuccinylase {ECO:0000256|HAMAP-Rule:MF_01690, ECO:0000256|SAAS:SAAS00082783}; Short=SDAP desuccinylase {ECO:0000256|HAMAP-Rule:MF_01690};; EC=3.5.1.18 {ECO:0000256|HAMAP-Rule:MF_01690, ECO:0000256|SAAS:SAAS00082783};; N-succinyl-LL-2,6-diaminoheptanedioate amidohydrolase {ECO:0000256|HAMAP-Rule:MF_01690}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
succinyl-diaminopimelate desuccinylase; K01439 succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] rbh
Succinyl-diaminopimelate desuccinylase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DIV6_9PROT rbh
SCNpilot_expt_500_p_scaffold_1328_2
RIFOXYC12_FULL_Burkholderiales_65_23_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2232..2735)
DNA (504bp) protein (168aa)
GCN5-related N-acetyltransferase n=1 Tax=Aromatoleum aromaticum (strain EbN1) RepID=Q5P631_AROAE
N-acetyltransferase
Tax=RIFOXYC12_FULL_Burkholderiales_65_23_curated
SCNpilot_expt_500_p_scaffold_1328_3
Candidatus Accumulibacter phosphatis, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2738..3016)
DNA (279bp) protein (93aa)
Uncharacterized protein n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RNT6_ACCPU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACV34222.1}; TaxID=522306 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Accumulibacter phosphatis (strain UW-1).;"
SCNpilot_expt_500_p_scaffold_1328_4
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3113..3934)
DNA (822bp) protein (274aa)
dapD; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase (EC:2.3.1.117); K00674 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase [EC:2.3.1.117] rbh
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase {ECO:0000255|HAMAP-Rule:MF_00811}; EC=2.3.1.117 {ECO:0000255|HAMAP-Rule:MF_00811};; Tetrahydrodipicolinate N-succinyltransferase {ECO:0000255|HAMAP-Rule:MF_00811}; Short=THDP succinyltransferase {ECO:0000255|HAMAP-Rule:MF_00811};; Short=THP succinyltransferase {ECO:0000255|HAMAP-Rule:MF_00811};; Short=Tetrahydropicolinate succinylase {ECO:0000255|HAMAP-Rule:MF_00811};; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitro
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=DAPD_NITMU rbh
SCNpilot_expt_500_p_scaffold_1328_5
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3948..5189)
DNA (1242bp) protein (414aa)
N-succinyl-L,L-diaminopimelate aminotransferase alternative {ECO:0000313|EMBL:CCU62574.1}; EC=2.6.1.17 {ECO:0000313|EMBL:CCU62574.1};; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
succinyldiaminopimelate transaminase; K14267 N-succinyldiaminopimelate aminotransferase [EC:2.6.1.17] rbh
N-succinyl-L,L-diaminopimelate aminotransferase alternative n=1 Tax=Nitrosospira sp. APG3 RepID=M5DIR5_9PROT rbh
SCNpilot_expt_500_p_scaffold_1328_6
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5273..6178
DNA (906bp) protein (302aa)
Permeases of the drug/metabolite transporter (DMT) superfamily n=1 Tax=Nitrosospira sp. APG3 RepID=M5DT49_9PROT rbh
Permeases of the drug/metabolite transporter (DMT) superfamily {ECO:0000313|EMBL:CCU62575.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
hypothetical protein rbh
SCNpilot_expt_500_p_scaffold_1328_7
R_Gallionellales_57_47, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6357..7103
DNA (747bp) protein (249aa)
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J3CGG1_9BURK
Tax=RIFCSPLOWO2_02_FULL_Gallionellales_57_47_curated
SCNpilot_expt_500_p_scaffold_1328_8
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7378..8328
DNA (951bp) protein (317aa)
Glycerate dehydrogenase {ECO:0000313|EMBL:CCU62576.1}; EC=1.1.1.29 {ECO:0000313|EMBL:CCU62576.1};; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
D-isomer specific 2-hydroxyacid dehydrogenase; K00018 glycerate dehydrogenase [EC:1.1.1.29] rbh
Glycerate dehydrogenase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DH06_9PROT rbh
SCNpilot_expt_500_p_scaffold_1328_9
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8771..9190
DNA (420bp) protein (140aa)
Rubrerythrin n=1 Tax=Nitrosospira sp. APG3 RepID=M5DIW0_9PROT
Rubrerythrin {ECO:0000313|EMBL:KIO47884.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
rubrerythrin
SCNpilot_expt_500_p_scaffold_1328_10
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9305..10633
DNA (1329bp) protein (443aa)
Fe-S oxidoreductase-like protein in Rubrerythrin cluster n=1 Tax=Nitrosospira sp. APG3 RepID=M5DJA0_9PROT rbh
Fe-S oxidoreductase-like protein in Rubrerythrin cluster {ECO:0000313|EMBL:CCU62578.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
putative ferredoxin rbh
SCNpilot_expt_500_p_scaffold_1328_11
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10698..11276
DNA (579bp) protein (193aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DIR9_9PROT
Uncharacterized protein {ECO:0000313|EMBL:KIO47882.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_1328_12
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11289..11861
DNA (573bp) protein (191aa)
Putative lipoprotein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DT56_9PROT
Putative lipoprotein {ECO:0000313|EMBL:CCU62580.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
putative lipoprotein
SCNpilot_expt_500_p_scaffold_1328_13
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12237..12569)
DNA (333bp) protein (111aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DIW4_9PROT
Uncharacterized protein {ECO:0000313|EMBL:KIO47880.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_1328_14
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12644..13768)
DNA (1125bp) protein (375aa)
Glutamate 5-kinase {ECO:0000256|HAMAP-Rule:MF_00456, ECO:0000256|SAAS:SAAS00057535}; EC=2.7.2.11 {ECO:0000256|HAMAP-Rule:MF_00456, ECO:0000256|SAAS:SAAS00186442};; Gamma-glutamyl kinase {ECO:0000256|HAMAP-Rule:MF_00456}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
gamma-glutamyl kinase (EC:2.7.2.11); K00931 glutamate 5-kinase [EC:2.7.2.11] rbh
Glutamate 5-kinase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DJA3_9PROT rbh
SCNpilot_expt_500_p_scaffold_1328_15
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14039..14437)
DNA (399bp) protein (133aa)
Uncharacterized protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y803_NITMU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABB75118.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
SCNpilot_expt_500_p_scaffold_1328_16
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14434..15279)
DNA (846bp) protein (282aa)
Uncharacterized protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y804_NITMU rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ABB75117.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
SCNpilot_expt_500_p_scaffold_1328_17
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15291..15803)
DNA (513bp) protein (171aa)
Uncharacterized protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y805_NITMU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABB75116.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
SCNpilot_expt_500_p_scaffold_1328_18
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15812..16033)
DNA (222bp) protein (74aa)
Uncharacterized protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y806_NITMU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABB75115.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
SCNpilot_expt_500_p_scaffold_1328_19
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16240..17340)
DNA (1101bp) protein (367aa)
GTPase Obg n=1 Tax=Nitrosospira sp. APG3 RepID=M5DT63_9PROT rbh
GTPase Obg {ECO:0000256|HAMAP-Rule:MF_01454}; GTP-binding protein Obg {ECO:0000256|HAMAP-Rule:MF_01454}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
obgE; GTPase ObgE; K03979 GTP-binding protein rbh
SCNpilot_expt_500_p_scaffold_1328_20
Nitrosomonas sp. Is79A3, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(17413..17673)
DNA (261bp) protein (87aa)
50S ribosomal protein L27 n=1 Tax=Nitrosomonas sp. (strain Is79A3) RepID=F8GEE7_NITSI
50S ribosomal protein L27; K02899 large subunit ribosomal protein L27
50S ribosomal protein L27 {ECO:0000256|HAMAP-Rule:MF_00539}; TaxID=261292 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas sp. (strain Is79A3).;"
SCNpilot_expt_500_p_scaffold_1328_21
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(17686..17997)
DNA (312bp) protein (104aa)
50S ribosomal protein L21 n=1 Tax=Nitrosospira sp. APG3 RepID=M5DIW7_9PROT
50S ribosomal protein L21 {ECO:0000256|HAMAP-Rule:MF_01363, ECO:0000256|RuleBase:RU000562}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
rplU; 50S ribosomal protein L21; K02888 large subunit ribosomal protein L21
Displaying 21 items

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