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SCNpilot_expt_500_p_scaffold_1414

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_1414_1
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3..1253)
DNA (1251bp) protein (417aa)
Glutamyl-tRNA reductase {ECO:0000256|HAMAP-Rule:MF_00087, ECO:0000256|RuleBase:RU000584}; Short=GluTR {ECO:0000256|HAMAP-Rule:MF_00087};; EC=1.2.1.70 {ECO:0000256|HAMAP-Rule:MF_00087, ECO:0000256|RuleBase:RU000584};; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
hemA; glutamyl-tRNA reductase; K02492 glutamyl-tRNA reductase [EC:1.2.1.70] rbh
Glutamyl-tRNA reductase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DLU3_9PROT rbh
SCNpilot_expt_500_p_scaffold_1414_2
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1509..1847)
DNA (339bp) protein (113aa)
MutT-like protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DJR7_9PROT
MutT-like protein {ECO:0000313|EMBL:CCU62728.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
NUDIX hydrolase
SCNpilot_expt_500_p_scaffold_1414_3
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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2194..4164
DNA (1971bp) protein (657aa)
periplasmic sensor signal transduction histidine kinase; K07675 two-component system, NarL family, sensor histidine kinase UhpB [EC:2.7.13.3] rbh
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; Flags: Precursor;; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
Periplasmic sensor signal transduction histidine kinase n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y9N2_NITMU rbh
SCNpilot_expt_500_p_scaffold_1414_4
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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4330..4965
DNA (636bp) protein (212aa)
Two component transcriptional regulator, LuxR family n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y9N3_NITMU rbh
LuxR family transcriptional regulator {ECO:0000313|EMBL:KIO48978.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
two component LuxR family transcriptional regulator rbh
SCNpilot_expt_500_p_scaffold_1414_5
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(5060..6016)
DNA (957bp) protein (319aa)
Urea transporter n=1 Tax=Nitrosomonas sp. AL212 RepID=F9ZD04_9PROT rbh
Urea transporter {ECO:0000313|EMBL:KIO47922.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
urea transporter; K08717 urea transporter rbh
SCNpilot_expt_500_p_scaffold_1414_6
Nitrosomonas sp. AL212, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(6137..6736)
DNA (600bp) protein (200aa)
Urease accessory protein UreG n=1 Tax=Nitrosomonas sp. AL212 RepID=F9ZD05_9PROT rbh
urease accessory protein ureG; K03189 urease accessory protein rbh
Urease accessory protein UreG {ECO:0000256|HAMAP-Rule:MF_01389}; TaxID=153948 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas sp. AL212.;"
SCNpilot_expt_500_p_scaffold_1414_7
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6817..7494)
DNA (678bp) protein (226aa)
Urease accessory protein UreF n=1 Tax=Nitrosospira sp. NpAV RepID=Q8GH73_9PROT rbh
Urease accessory protein UreF {ECO:0000256|HAMAP-Rule:MF_01385}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
urease accessory protein ureF; K03188 urease accessory protein rbh
SCNpilot_expt_500_p_scaffold_1414_8
unknown

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7536..8033
DNA (498bp) protein (166aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_1414_9
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8058..9764)
DNA (1707bp) protein (569aa)
Urease subunit alpha {ECO:0000256|HAMAP-Rule:MF_01953}; EC=3.5.1.5 {ECO:0000256|HAMAP-Rule:MF_01953, ECO:0000256|SAAS:SAAS00033844};; Urea amidohydrolase subunit alpha {ECO:0000256|HAMAP-Rule:MF_01953}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
urease subunit alpha (EC:3.5.1.5); K01428 urease subunit alpha [EC:3.5.1.5] rbh
Urease subunit alpha n=1 Tax=Nitrosospira sp. NpAV RepID=Q8GH75_9PROT rbh
SCNpilot_expt_500_p_scaffold_1414_10
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9804..10127)
DNA (324bp) protein (108aa)
Urease subunit beta {ECO:0000256|HAMAP-Rule:MF_01954, ECO:0000313|EMBL:KIO47819.1}; EC=3.5.1.5 {ECO:0000256|HAMAP-Rule:MF_01954, ECO:0000256|SAAS:SAAS00108778};; Urea amidohydrolase subunit beta {ECO:0000256|HAMAP-Rule:MF_01954}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
urease subunit beta (EC:3.5.1.5); K01429 urease subunit beta [EC:3.5.1.5]
Urease subunit beta n=1 Tax=Nitrosospira sp. NpAV RepID=Q8GH76_9PROT
SCNpilot_expt_500_p_scaffold_1414_11
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10142..10444)
DNA (303bp) protein (101aa)
Urease subunit gamma {ECO:0000256|HAMAP-Rule:MF_00739, ECO:0000256|RuleBase:RU003850}; EC=3.5.1.5 {ECO:0000256|HAMAP-Rule:MF_00739, ECO:0000256|RuleBase:RU003850};; Urea amidohydrolase subunit gamma {ECO:0000256|HAMAP-Rule:MF_00739}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
urease subunit gamma (EC:3.5.1.5); K01430 urease subunit gamma [EC:3.5.1.5]
Urease subunit gamma n=1 Tax=Nitrosospira sp. NpAV RepID=Q8GBA9_9PROT
SCNpilot_expt_500_p_scaffold_1414_12
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10552..10836)
DNA (285bp) protein (95aa)
Urease accessory protein UreD n=1 Tax=Nitrosospira sp. NpAV RepID=Q7BBX8_9PROT
Urease accessory protein UreD {ECO:0000256|HAMAP-Rule:MF_01384}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
urease accessory protein UreD; K03190 urease accessory protein
SCNpilot_expt_500_p_scaffold_1414_13
unknown

Not on your lists

11026..11361
DNA (336bp) protein (112aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_1414_14
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(11631..12935)
DNA (1305bp) protein (435aa)
Short chain amide porin n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y9N1_NITMU rbh
hypothetical protein rbh
Short chain amide porin {ECO:0000313|EMBL:ABB74540.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
SCNpilot_expt_500_p_scaffold_1414_15
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13452..14810
DNA (1359bp) protein (453aa)
Uncharacterized protein n=1 Tax=Pseudomonas stutzeri MF28 RepID=U3HPP7_PSEST rbh
Uncharacterized protein {ECO:0000313|EMBL:EQM77352.1}; TaxID=1333856 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri MF28.;"
hypothetical protein rbh
SCNpilot_expt_500_p_scaffold_1414_16
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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14953..16299
DNA (1347bp) protein (449aa)
5'-nucleotidase (EC:3.1.3.5); K01081 5'-nucleotidase [EC:3.1.3.5] rbh
5'-nucleotidase id=1352866 bin=GWE1_T_denit_62_9 species=Azoarcus sp. genus=Azoarcus taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb rbh
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_500_p_scaffold_1414_17
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16362..16781
DNA (420bp) protein (140aa)
5'-nucleotidase (EC:3.1.3.5); K01081 5'-nucleotidase [EC:3.1.3.5]
5'-nucleotidase id=1352865 bin=GWE1_T_denit_62_9 species=Azoarcus sp. genus=Azoarcus taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
Displaying 17 items

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