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SCNpilot_expt_500_p_scaffold_229

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Displaying items 1-30 of 72 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_229_1
unknown

Not on your lists

2..175
DNA (174bp) protein (58aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_229_2
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

199..2622
DNA (2424bp) protein (808aa)
Lead, cadmium, zinc and mercury transporting ATPase Copper-translocating P-type ATPase {ECO:0000313|EMBL:CCU61309.1}; EC=3.6.3.3 {ECO:0000313|EMBL:CCU61309.1};; EC=3.6.3.4 {ECO:0000313|EMBL:CCU61309.1};; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
heavy metal translocating P-type ATPase; K01533 Cu2+-exporting ATPase [EC:3.6.3.4] rbh
Lead, cadmium, zinc and mercury transporting ATPase Copper-translocating P-type ATPase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DFW8_9PROT rbh
SCNpilot_expt_500_p_scaffold_229_3
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2658..2867
DNA (210bp) protein (70aa)
Copper ion binding protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DPE8_9PROT
Copper ion binding protein {ECO:0000313|EMBL:CCU61310.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
heavy metal transport/detoxification protein
SCNpilot_expt_500_p_scaffold_229_4
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2842..3159
DNA (318bp) protein (106aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DF28_9PROT
Uncharacterized protein {ECO:0000313|EMBL:CCU61311.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_229_5
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3353..4135
DNA (783bp) protein (261aa)
Probable cytochrome c2 n=1 Tax=Nitrosospira sp. APG3 RepID=M5DG52_9PROT rbh
Cytochrome C553 {ECO:0000313|EMBL:KIO47859.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
cytochrome c rbh
SCNpilot_expt_500_p_scaffold_229_6
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4132..5463
DNA (1332bp) protein (444aa)
Putative diheme cytochrome c-553 n=1 Tax=Nitrosospira sp. APG3 RepID=M5DGH4_9PROT rbh
Alcohol dehydrogenase {ECO:0000313|EMBL:KIO47840.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
cytochrome c, class I rbh
SCNpilot_expt_500_p_scaffold_229_7
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5503..6918)
DNA (1416bp) protein (472aa)
Sulfate transporter family protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DJY1_9PROT
Sulfate transporter {ECO:0000313|EMBL:KIO48167.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
sulfate transporter
SCNpilot_expt_500_p_scaffold_229_8
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7387..9642)
DNA (2256bp) protein (752aa)
TonB-dependent receptor n=1 Tax=Nitrosospira sp. APG3 RepID=M5DJK0_9PROT rbh
TonB-dependent receptor {ECO:0000313|EMBL:CCU62902.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
TonB-dependent receptor; K02014 iron complex outermembrane recepter protein rbh
SCNpilot_expt_500_p_scaffold_229_9
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9663..9917
DNA (255bp) protein (85aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DU47_9PROT
Uncharacterized protein {ECO:0000313|EMBL:KIO48172.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
SCNpilot_expt_500_p_scaffold_229_10
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10076..10582)
DNA (507bp) protein (169aa)
Cupin domain protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DK32_9PROT
Cupin domain protein {ECO:0000313|EMBL:CCU62898.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
cupin
SCNpilot_expt_500_p_scaffold_229_11
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11056..11436)
DNA (381bp) protein (127aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DJJ6_9PROT
Uncharacterized protein {ECO:0000313|EMBL:KIO48173.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
SCNpilot_expt_500_p_scaffold_229_12
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11604..12323)
DNA (720bp) protein (240aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DU44_9PROT
Uncharacterized protein {ECO:0000313|EMBL:CCU62895.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_229_13
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12471..12911)
DNA (441bp) protein (147aa)
Uncharacterized protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y941_NITMU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABB74730.1}; Flags: Precursor;; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
SCNpilot_expt_500_p_scaffold_229_14
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13113..14072)
DNA (960bp) protein (320aa)
ABC-3 protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y9N8_NITMU rbh
hypothetical protein; K02075 zinc/manganese transport system permease protein rbh
ABC-3 protein {ECO:0000313|EMBL:ABB74533.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
SCNpilot_expt_500_p_scaffold_229_15
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14072..14905)
DNA (834bp) protein (278aa)
ABC transporter related protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y9N7_NITMU rbh
ABC transporter {ECO:0000313|EMBL:KIO47935.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
ABC transporter-like protein; K02074 zinc/manganese transport system ATP-binding protein rbh
SCNpilot_expt_500_p_scaffold_229_16
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14877..15863)
DNA (987bp) protein (329aa)
Periplasmic solute binding protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y9N6_NITMU rbh
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KIO47936.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
periplasmic solute binding protein; K02077 zinc/manganese transport system substrate-binding protein rbh
SCNpilot_expt_500_p_scaffold_229_17
unknown

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comp(15966..16214)
DNA (249bp) protein (83aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_229_18
Methylococcus capsulatus, Methylococcus, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16294..18480
DNA (2187bp) protein (729aa)
hypothetical protein n=1 Tax=Methylovulum miyakonense RepID=UPI00036DF259 rbh
TonB-dependent receptor rbh
Putative TonB-dependent receptor {ECO:0000313|EMBL:AAU91589.1}; TaxID=243233 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylococcus.;" source="Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath).;"
SCNpilot_expt_500_p_scaffold_229_19
unknown

Not on your lists

comp(18727..19152)
DNA (426bp) protein (142aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_229_20
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19234..19992
DNA (759bp) protein (253aa)
Carbonic anhydrase {ECO:0000256|RuleBase:RU003956, ECO:0000313|EMBL:KIO47939.1}; EC=4.2.1.1 {ECO:0000256|RuleBase:RU003956};; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
carbonic anhydrase; K01673 carbonic anhydrase [EC:4.2.1.1] rbh
Carbonic anhydrase n=1 Tax=Nitrosomonas sp. AL212 RepID=F9ZGZ5_9PROT rbh
SCNpilot_expt_500_p_scaffold_229_21
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20099..20404)
DNA (306bp) protein (102aa)
Cell division protein FtsB n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y9N9_NITMU
Cell division protein FtsB {ECO:0000256|HAMAP-Rule:MF_00599, ECO:0000256|SAAS:SAAS00014481}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
septum formation initiator; K05589 cell division protein FtsB
SCNpilot_expt_500_p_scaffold_229_22
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20452..21735)
DNA (1284bp) protein (428aa)
Enolase {ECO:0000256|HAMAP-Rule:MF_00318}; EC=4.2.1.11 {ECO:0000256|HAMAP-Rule:MF_00318};; 2-phospho-D-glycerate hydro-lyase {ECO:0000256|HAMAP-Rule:MF_00318}; 2-phosphoglycerate dehydratase {ECO:0000256|HAMAP-Rule:MF_00318}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
eno; phosphopyruvate hydratase (EC:4.2.1.11); K01689 enolase [EC:4.2.1.11] rbh
Enolase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DGB2_9PROT rbh
SCNpilot_expt_500_p_scaffold_229_23
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21956..23635)
DNA (1680bp) protein (560aa)
CTP synthase {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037303}; EC=6.3.4.2 {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037401};; CTP synthetase {ECO:0000256|HAMAP-Rule:MF_01227}; UTP--ammonia ligase {ECO:0000256|HAMAP-Rule:MF_01227}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
pyrG; CTP synthetase (EC:6.3.4.2); K01937 CTP synthase [EC:6.3.4.2] rbh
CTP synthase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DI52_9PROT rbh
SCNpilot_expt_500_p_scaffold_229_24
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23996..24475)
DNA (480bp) protein (160aa)
Conserved domain protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DGA9_9PROT
Conserved domain protein {ECO:0000313|EMBL:CCU62251.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
ErfK/YbiS/YcfS/YnhG
SCNpilot_expt_500_p_scaffold_229_25
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24472..24966)
DNA (495bp) protein (165aa)
tRNA-specific adenosine deaminase {ECO:0000256|HAMAP-Rule:MF_00972}; EC=3.5.4.33 {ECO:0000256|HAMAP-Rule:MF_00972};; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
tRNA-specific adenosine-34 deaminase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DSA6_9PROT
cytidine/deoxycytidylate deaminase zinc-binding subunit
SCNpilot_expt_500_p_scaffold_229_26
unknown

Not on your lists

25268..26464
DNA (1197bp) protein (399aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_229_27
unknown

Not on your lists

26669..26965
DNA (297bp) protein (99aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_229_28
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27111..28052
DNA (942bp) protein (314aa)
Uncharacterized protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y9P4_NITMU rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ABB74527.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
SCNpilot_expt_500_p_scaffold_229_29
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28326..28946
DNA (621bp) protein (207aa)
cytochrome c biogenesis protein CcmA; K02193 heme exporter protein A [EC:3.6.3.41] rbh
Cytochrome c biogenesis ATP-binding export protein CcmA {ECO:0000255|HAMAP-Rule:MF_01707}; EC=3.6.3.41 {ECO:0000255|HAMAP-Rule:MF_01707};; Heme exporter protein A {ECO:0000255|HAMAP-Rule:MF_01707}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
Cytochrome c biogenesis ATP-binding export protein CcmA n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=CCMA_NITMU rbh
SCNpilot_expt_500_p_scaffold_229_30
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28948..29607
DNA (660bp) protein (220aa)
Heme exporter protein B n=1 Tax=Nitrosospira sp. APG3 RepID=M5DIJ9_9PROT rbh
Heme exporter protein B {ECO:0000256|PIRNR:PIRNR002764}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
heme exporter protein CcmB; K02194 heme exporter protein B rbh
Displaying items 1-30 of 72 in total

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