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SCNpilot_expt_500_p_scaffold_231

Search features with annotation key words

Displaying items 1-30 of 83 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_231_1
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(496..957)
DNA (462bp) protein (154aa)
Putative exported protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DFI5_9PROT
Putative exported protein {ECO:0000313|EMBL:CCU61951.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
Cna B domain-containing protein
SCNpilot_expt_500_p_scaffold_231_2
unknown

Not on your lists

comp(969..1283)
DNA (315bp) protein (105aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_231_3
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1866..2807)
DNA (942bp) protein (314aa)
Bile acid:sodium symporter n=1 Tax=Nitrosomonas sp. (strain Is79A3) RepID=F8GIV2_NITSI rbh
Transporter {ECO:0000313|EMBL:KIO48507.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
Bile acid:sodium symporter; K03453 bile acid:Na+ symporter, BASS family rbh
SCNpilot_expt_500_p_scaffold_231_4
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2816..3562)
DNA (747bp) protein (249aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DFI9_9PROT rbh
Methyltransferase type 12 {ECO:0000313|EMBL:KIO48506.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
hypothetical protein rbh
SCNpilot_expt_500_p_scaffold_231_5
unknown

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4206..4349
DNA (144bp) protein (48aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_231_6
unknown

Not on your lists

4811..5308
DNA (498bp) protein (166aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_231_7
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5598..6518
DNA (921bp) protein (307aa)
RNA polymerase sigma factor RpoS n=1 Tax=Nitrosospira sp. APG3 RepID=M5DF55_9PROT
RNA polymerase sigma factor RpoS {ECO:0000256|HAMAP-Rule:MF_00959}; Sigma S {ECO:0000256|HAMAP-Rule:MF_00959}; Sigma-38 {ECO:0000256|HAMAP-Rule:MF_00959}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
RNA polymerase sigma factor RpoS; K03087 RNA polymerase nonessential primary-like sigma factor
SCNpilot_expt_500_p_scaffold_231_8
unknown

Not on your lists

comp(6424..7008)
DNA (585bp) protein (195aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_231_9
unknown

Not on your lists

7110..7232
DNA (123bp) protein (41aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_231_10
CG_Beta_01, Betaproteobacteria, Proteobacteria, Bacteria

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7310..8032
DNA (723bp) protein (241aa)
hypothetical protein n=1 Tax=zeta proteobacterium SCGC AB-604-B04 RepID=UPI00036B2249 rbh
hypothetical protein; K07491 putative transposase
Tax=CG_Beta_01
SCNpilot_expt_500_p_scaffold_231_11
Acidocella aminolytica, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8482..9789
DNA (1308bp) protein (436aa)
FAD-dependent pyridine nucleotide-disulfide; K03885 NADH dehydrogenase [EC:1.6.99.3] rbh
hypothetical protein n=1 Tax=Herbaspirillum seropedicae RepID=UPI0002EF89A4 rbh
NADH dehydrogenase {ECO:0000313|EMBL:GAN80347.1}; TaxID=1120923 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella aminolytica 101 = DSM 11237.;"
SCNpilot_expt_500_p_scaffold_231_12
unknown

Not on your lists

9992..10192
DNA (201bp) protein (67aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_231_13
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10502..10831
DNA (330bp) protein (110aa)
4-cresol dehydrogenase [hydroxylating] cytochrome c subunit n=1 Tax=Nitrosospira sp. APG3 RepID=M5DJP1_9PROT
Cytochrome C {ECO:0000313|EMBL:KIO49515.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
cytochrome c, class I
SCNpilot_expt_500_p_scaffold_231_14
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10854..11843
DNA (990bp) protein (330aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DJ42_9PROT
Uncharacterized protein {ECO:0000313|EMBL:KIO49516.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_231_15
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11879..13423
DNA (1545bp) protein (515aa)
4-cresol dehydrogenase [hydroxylating] flavoprotein subunit n=1 Tax=Nitrosospira sp. APG3 RepID=M5DTL4_9PROT rbh
4-cresol dehydrogenase {ECO:0000313|EMBL:KIO49517.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
FAD linked oxidase-like protein rbh
SCNpilot_expt_500_p_scaffold_231_16
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13582..14691
DNA (1110bp) protein (370aa)
xylB; aryl-alcohol dehydrogenase (EC:1.1.1.90); K00055 aryl-alcohol dehydrogenase [EC:1.1.1.90] rbh
Aryl-alcohol dehydrogenase n=1 Tax=Candidatus Nitrospira defluvii RepID=D8P7G9_9BACT rbh
Alcohol dehydrogenase {ECO:0000313|EMBL:KIO49647.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
SCNpilot_expt_500_p_scaffold_231_17
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14793..15071)
DNA (279bp) protein (93aa)
NADPH-dependent FMN reductase n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y8P6_NITMU
NADPH-dependent FMN reductase
NADPH-dependent FMN reductase {ECO:0000313|EMBL:ABB74875.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
SCNpilot_expt_500_p_scaffold_231_18
Novosphingobium sp. Rr 2-17, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15172..16671)
DNA (1500bp) protein (500aa)
betaine-aldehyde dehydrogenase (EC:1.2.1.8) rbh
Betaine-aldehyde dehydrogenase n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9WBU5_9SPHN rbh
Betaine-aldehyde dehydrogenase {ECO:0000313|EMBL:EIZ77618.1}; TaxID=555793 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. Rr 2-17.;"
SCNpilot_expt_500_p_scaffold_231_19
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17311..17604)
DNA (294bp) protein (98aa)
Uncharacterized protein {ECO:0000313|EMBL:KIO48487.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
SCNpilot_expt_500_p_scaffold_231_20
Nitrosococcus oceani, Nitrosococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17969..18187
DNA (219bp) protein (73aa)
Uncharacterized protein {ECO:0000313|EMBL:KFI17852.1}; Flags: Fragment;; TaxID=314279 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Nitrosococcus.;" source="Nitrosococcus oceani C-27.;"
SCNpilot_expt_500_p_scaffold_231_21
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18246..18437
DNA (192bp) protein (64aa)
IstB domain protein ATP-binding protein n=1 Tax=Thauera sp. (strain MZ1T) RepID=C4ZJB0_THASP
ATP-binding protein {ECO:0000313|EMBL:EWY35666.1}; TaxID=1385369 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
IstB domain-containing protein ATP-binding protein
SCNpilot_expt_500_p_scaffold_231_22
unknown

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comp(18547..18804)
DNA (258bp) protein (86aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_231_23
unknown

Not on your lists

19242..19382
DNA (141bp) protein (47aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_231_24
R_Methylophilales_57_10, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19453..19830
DNA (378bp) protein (126aa)
Transposase n=2 Tax=Aromatoleum aromaticum (strain EbN1) RepID=Q5NWC2_AROAE
istA; transposase
Tax=RIFCSPHIGHO2_02_FULL_Methylophilales_57_10_curated
SCNpilot_expt_500_p_scaffold_231_25
RIFOXYB12_FULL_Gallionellales_54_9_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19839..20777
DNA (939bp) protein (313aa)
Resolvase domain protein n=1 Tax=Pseudogulbenkiania ferrooxidans 2002 RepID=B9Z4V7_9NEIS
resolvase domain-containing protein
Tax=RIFOXYB12_FULL_Gallionellales_54_9_curated
SCNpilot_expt_500_p_scaffold_231_26
Herbaspirillum sp. YR522, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20948..22132
DNA (1185bp) protein (395aa)
Site-specific recombinase XerD n=1 Tax=Herbaspirillum sp. YR522 RepID=J2VNC3_9BURK rbh
Site-specific recombinase XerD {ECO:0000313|EMBL:EJN07612.1}; TaxID=1144342 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. YR522.;"
integrase family protein rbh
SCNpilot_expt_500_p_scaffold_231_27
unknown

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22203..22862
DNA (660bp) protein (220aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_231_28
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23805..24740
DNA (936bp) protein (312aa)
Virulence-associated protein E n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WYL8_9BRAD rbh
Virulence-associated protein E {ECO:0000313|EMBL:EAQ34923.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
virulence-associated protein E rbh
SCNpilot_expt_500_p_scaffold_231_29
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24733..26691
DNA (1959bp) protein (653aa)
Putative uncharacterized protein n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3ST72_NITWN rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ABA04519.1}; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
SCNpilot_expt_500_p_scaffold_231_30
Bradyrhizobium sp. CCGE-LA001, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26688..27182
DNA (495bp) protein (165aa)
Uncharacterized protein n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WYL6_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EJZ31182.1}; TaxID=1223566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. CCGE-LA001.;"
Displaying items 1-30 of 83 in total

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