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SCNpilot_expt_500_p_scaffold_393

Search features with annotation key words

Displaying items 1-30 of 46 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_393_1
unknown

Not on your lists

comp(3..173)
DNA (171bp) protein (57aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_393_2
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

790..2448
DNA (1659bp) protein (553aa)
MotA/TolQ/ExbB proton channel family protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DLT5_9PROT rbh
MotA/TolQ/ExbB proton channel family protein {ECO:0000313|EMBL:CCU63984.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
MotA/TolQ/ExbB proton channel rbh
SCNpilot_expt_500_p_scaffold_393_3
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2458..2862
DNA (405bp) protein (135aa)
Biopolymer transport protein ExbD/TolR n=1 Tax=Nitrosospira sp. APG3 RepID=M5DXK5_9PROT
Biopolymer transporter ExbD {ECO:0000313|EMBL:KIO49704.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
biopolymer transport protein ExbD/TolR; K03559 biopolymer transport protein ExbD
SCNpilot_expt_500_p_scaffold_393_4
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2867..3535
DNA (669bp) protein (223aa)
Ferric siderophore transport system, periplasmic binding protein TonB n=1 Tax=Nitrosospira sp. APG3 RepID=M5DKI2_9PROT rbh
Ferric siderophore transport system, periplasmic binding protein TonB {ECO:0000313|EMBL:CCU63986.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
TonB-dependent receptor rbh
SCNpilot_expt_500_p_scaffold_393_5
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3535..5298
DNA (1764bp) protein (588aa)
Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid n=1 Tax=Nitrosospira sp. APG3 RepID=M5DLY1_9PROT rbh
Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid {ECO:0000313|EMBL:CCU63987.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
hypothetical protein rbh
SCNpilot_expt_500_p_scaffold_393_6
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5333..5983
DNA (651bp) protein (217aa)
ATPase involved in DNA repair n=1 Tax=Nitrosospira sp. APG3 RepID=M5DLT8_9PROT
DNA repair protein {ECO:0000313|EMBL:KIO49702.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_393_7
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6255..6818
DNA (564bp) protein (188aa)
Anthranilate synthase component II {ECO:0000313|EMBL:KIO49701.1}; EC=4.1.3.27 {ECO:0000313|EMBL:KIO49701.1};; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
glutamine amidotransferase of anthranilate synthase or para-aminobenzoate synthase; K01658 anthranilate synthase component II [EC:4.1.3.27] rbh
Anthranilate synthase, amidotransferase component @ Para-aminobenzoate synthase,amidotransferase component n=1 Tax=Nitrosospira sp. APG3 RepID=M5DLY5_9PROT rbh
SCNpilot_expt_500_p_scaffold_393_8
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6897..7970
DNA (1074bp) protein (358aa)
Anthranilate phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00211, ECO:0000256|SAAS:SAAS00083107}; EC=2.4.2.18 {ECO:0000256|HAMAP-Rule:MF_00211, ECO:0000256|SAAS:SAAS00083113};; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
anthranilate phosphoribosyltransferase (EC:2.4.2.18); K00766 anthranilate phosphoribosyltransferase [EC:2.4.2.18] rbh
Anthranilate phosphoribosyltransferase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DMI8_9PROT rbh
SCNpilot_expt_500_p_scaffold_393_9
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7970..8803
DNA (834bp) protein (278aa)
Indole-3-glycerol phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00134, ECO:0000256|SAAS:SAAS00046689}; Short=IGPS {ECO:0000256|HAMAP-Rule:MF_00134};; EC=4.1.1.48 {ECO:0000256|HAMAP-Rule:MF_00134, ECO:0000256|SAAS:SAAS00046705};; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
indole-3-glycerol-phosphate synthase (EC:4.1.1.48); K01609 indole-3-glycerol phosphate synthase [EC:4.1.1.48] rbh
Indole-3-glycerol phosphate synthase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DLU2_9PROT rbh
SCNpilot_expt_500_p_scaffold_393_10
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9025..10269
DNA (1245bp) protein (415aa)
Outer membrane protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DXL8_9PROT rbh
Outer membrane protein {ECO:0000313|EMBL:CCU63995.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
porin rbh
SCNpilot_expt_500_p_scaffold_393_11
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10611..11720
DNA (1110bp) protein (370aa)
Radical SAM n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y5X2_NITMU rbh
radical SAM family protein rbh
Radical SAM {ECO:0000313|EMBL:ABB75849.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
SCNpilot_expt_500_p_scaffold_393_12
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11935..12573
DNA (639bp) protein (213aa)
ABC-type transport system involved in resistance to organic solvents, auxiliary component n=1 Tax=Nitrosospira sp. APG3 RepID=M5DMJ1_9PROT rbh
ABC-type transport system involved in resistance to organic solvents, auxiliary component {ECO:0000313|EMBL:CCU63998.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
toluene tolerance
SCNpilot_expt_500_p_scaffold_393_13
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12624..15290
DNA (2667bp) protein (889aa)
Hopanoid-associated RND transporter, HpnN n=1 Tax=Nitrosospira sp. APG3 RepID=M5DLU6_9PROT rbh
Hopanoid-associated RND transporter, HpnN {ECO:0000313|EMBL:CCU63999.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
hypothetical protein; K07003 rbh
SCNpilot_expt_500_p_scaffold_393_14
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15608..16366
DNA (759bp) protein (253aa)
Surface lipoprotein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DXM4_9PROT rbh
Membrane protein {ECO:0000313|EMBL:KIO49695.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
VacJ-like lipoprotein; K04754 lipoprotein rbh
SCNpilot_expt_500_p_scaffold_393_15
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16475..18415
DNA (1941bp) protein (647aa)
Squalene--hopene cyclase {ECO:0000313|EMBL:CCU64002.1}; EC=5.4.99.17 {ECO:0000313|EMBL:CCU64002.1};; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
squalene cyclase; K06045 squalene-hopene cyclase [EC:5.4.99.17 4.2.1.129] rbh
Squalene--hopene cyclase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DLZ3_9PROT rbh
SCNpilot_expt_500_p_scaffold_393_16
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18412..19110
DNA (699bp) protein (233aa)
Adenosylhopane nucleosidase, HpnG n=1 Tax=Nitrosospira sp. APG3 RepID=M5DMJ4_9PROT rbh
Phosphorylase {ECO:0000313|EMBL:KIO49694.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
purine phosphorylase family protein 1
SCNpilot_expt_500_p_scaffold_393_17
Amycolatopsis mediterranei, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19292..20929)
DNA (1638bp) protein (546aa)
Phosphatase-related protein n=3 Tax=Amycolatopsis mediterranei RepID=D8HQ97_AMYMU rbh
phosphatase-like protein rbh
Phosphatase-related protein {ECO:0000313|EMBL:AEK46498.1}; TaxID=713604 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis mediterranei (strain S699) (Nocardia mediterranei).;"
SCNpilot_expt_500_p_scaffold_393_18
Actinoplanes sp. N902-109, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21307..22233
DNA (927bp) protein (309aa)
hypothetical protein n=1 Tax=Nonomuraea coxensis RepID=UPI00035F2832
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGL15926.1}; TaxID=649831 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes sp. N902-109.;"
SCNpilot_expt_500_p_scaffold_393_19
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22307..23674)
DNA (1368bp) protein (456aa)
D-lactate dehydrogenase (cytochrome) (EC:1.1.2.4); K03777 D-lactate dehydrogenase [EC:1.1.1.28] rbh
Fe-S protein, homolog of lactate dehydrogenase SO1521 n=1 Tax=Nitrosospira sp. APG3 RepID=M5DF67_9PROT rbh
Dimethylmenaquinone methyltransferase {ECO:0000313|EMBL:KIO48016.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
SCNpilot_expt_500_p_scaffold_393_20
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23687..24274)
DNA (588bp) protein (196aa)
21 kDa hemolysin n=1 Tax=Nitrosospira sp. APG3 RepID=M5DGJ0_9PROT
Transporter {ECO:0000313|EMBL:KIO48017.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
transport-associated protein
SCNpilot_expt_500_p_scaffold_393_21
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24327..24692)
DNA (366bp) protein (122aa)
UPF0102 protein EBAPG3_5290 n=1 Tax=Nitrosospira sp. APG3 RepID=M5DGV2_9PROT
UPF0102 protein SQ11_13940 {ECO:0000256|HAMAP-Rule:MF_00048}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
hypothetical protein; K07460 putative endonuclease
SCNpilot_expt_500_p_scaffold_393_22
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25060..25914
DNA (855bp) protein (285aa)
Ribosomal RNA small subunit methyltransferase I {ECO:0000256|HAMAP-Rule:MF_01877}; EC=2.1.1.198 {ECO:0000256|HAMAP-Rule:MF_01877};; 16S rRNA 2'-O-ribose C1402 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01877}; rRNA (cytidine-2'-O-)-methyltransferase RsmI {ECO:0000256|HAMAP-Rule:MF_01877}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
hypothetical protein; K07056 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] rbh
Ribosomal RNA small subunit methyltransferase I n=1 Tax=Nitrosospira sp. APG3 RepID=M5DPY0_9PROT rbh
SCNpilot_expt_500_p_scaffold_393_23
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26099..26338
DNA (240bp) protein (80aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DF68_9PROT
Thioredoxin {ECO:0000313|EMBL:KIO48021.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_393_24
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26566..27024
DNA (459bp) protein (153aa)
phosphohistidine phosphatase SixA; K08296 phosphohistidine phosphatase [EC:3.1.3.-]
Phosphohistidine phosphatase SixA n=1 Tax=Nitrosospira sp. APG3 RepID=M5DGJ5_9PROT
Phosphohistidine phosphatase SixA {ECO:0000313|EMBL:CCU61512.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
SCNpilot_expt_500_p_scaffold_393_25
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27192..29090
DNA (1899bp) protein (633aa)
Probable potassium transport system protein kup n=1 Tax=Nitrosospira sp. APG3 RepID=M5DGA4_9PROT rbh
Probable potassium transport system protein kup {ECO:0000256|HAMAP-Rule:MF_01522}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
K+ potassium transporter; K03549 KUP system potassium uptake protein rbh
SCNpilot_expt_500_p_scaffold_393_26
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29153..31576)
DNA (2424bp) protein (808aa)
Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(S) n=1 Tax=Nitrosospira sp. APG3 RepID=M5DPY5_9PROT rbh
Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(S) {ECO:0000313|EMBL:CCU61515.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase rbh
SCNpilot_expt_500_p_scaffold_393_27
Janthinobacterium sp. HH01, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32011..32490)
DNA (480bp) protein (160aa)
3-demethylubiquinone-9 3-methyltransferase n=1 Tax=Janthinobacterium sp. HH01 RepID=L9PGM5_9BURK rbh
3-demethylubiquinone-9 3-methyltransferase {ECO:0000313|EMBL:ELX10762.1}; TaxID=1198452 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium sp. HH01.;"
3-demethylubiquinone-9 3-methyltransferase
SCNpilot_expt_500_p_scaffold_393_28
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32840..33391
DNA (552bp) protein (184aa)
Probable cytochrome c5 n=1 Tax=Nitrosospira sp. APG3 RepID=M5DGA7_9PROT
Probable cytochrome c5 {ECO:0000313|EMBL:CCU61519.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
cytochrome c, class I
SCNpilot_expt_500_p_scaffold_393_29
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33585..34412
DNA (828bp) protein (276aa)
Bis(5'-nucleosyl)-tetraphosphatase, symmetrical {ECO:0000256|HAMAP-Rule:MF_00199, ECO:0000256|SAAS:SAAS00088338}; EC=3.6.1.41 {ECO:0000256|HAMAP-Rule:MF_00199, ECO:0000256|SAAS:SAAS00088330};; Ap4A hydrolase {ECO:0000256|HAMAP-Rule:MF_00199}; Diadenosine 5',5'''-P1,P4-tetraphosphate pyrophosphohydrolase {ECO:0000256|HAMAP-Rule:MF_00199}; Diadenosine tetraphosphatase {ECO:0000256|HAMAP-Rule:MF_00199}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitr
apaH; diadenosine tetraphosphatase (EC:3.6.1.41); K01525 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) [EC:3.6.1.41] rbh
Bis(5'-nucleosyl)-tetraphosphatase, symmetrical n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=APAH_NITMU rbh
SCNpilot_expt_500_p_scaffold_393_30
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34339..34917)
DNA (579bp) protein (193aa)
phospholipid/glycerol acyltransferase; K00655 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
1-acyl-sn-glycerol-3-phosphate acyltransferase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DF70_9PROT
Glycerol acyltransferase {ECO:0000313|EMBL:KIO48027.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
Displaying items 1-30 of 46 in total

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