ggKbase home page

SCNpilot_expt_500_p_scaffold_437

Search features with annotation key words

Displaying items 1-30 of 77 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_437_1
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..462
DNA (462bp) protein (154aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DJA2_9PROT
Uncharacterized protein {ECO:0000313|EMBL:CCU62747.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
putative thiol-disulfide oxidoreductase DCC
SCNpilot_expt_500_p_scaffold_437_2
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(556..1530)
DNA (975bp) protein (325aa)
Dihydroorotase {ECO:0000256|HAMAP-Rule:MF_00219, ECO:0000256|RuleBase:RU003440}; Short=DHOase {ECO:0000256|HAMAP-Rule:MF_00219};; EC=3.5.2.3 {ECO:0000256|HAMAP-Rule:MF_00219, ECO:0000256|RuleBase:RU003440};; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
dihydroorotase (EC:3.5.2.3); K01465 dihydroorotase [EC:3.5.2.3] rbh
Dihydroorotase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DJ78_9PROT rbh
SCNpilot_expt_500_p_scaffold_437_3
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1604..2782)
DNA (1179bp) protein (393aa)
Ferredoxin reductase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DTS2_9PROT rbh
Pyridine nucleotide-disulfide oxidoreductase {ECO:0000313|EMBL:KIO49718.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
FAD-dependent pyridine nucleotide-disulfide oxidoreductase rbh
SCNpilot_expt_500_p_scaffold_437_4
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3065..3742
DNA (678bp) protein (226aa)
Uncharacterized protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YC57_NITMU rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ABB73664.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
SCNpilot_expt_500_p_scaffold_437_5
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3756..4622
DNA (867bp) protein (289aa)
bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/5,10-methylene-tetrahydrofolate cyclohydrolase (EC:3.5.4.9); K01491 methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9] rbh
Bifunctional protein FolD n=1 Tax=Nitrosospira sp. APG3 RepID=M5DJT7_9PROT rbh
Bifunctional protein FolD {ECO:0000256|HAMAP-Rule:MF_01576}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
SCNpilot_expt_500_p_scaffold_437_6
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4665..7334
DNA (2670bp) protein (890aa)
Pyruvate dehydrogenase E1 component {ECO:0000256|PIRNR:PIRNR000156}; EC=1.2.4.1 {ECO:0000256|PIRNR:PIRNR000156};; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
aceE; pyruvate dehydrogenase subunit E1; K00163 pyruvate dehydrogenase E1 component [EC:1.2.4.1] rbh
Pyruvate dehydrogenase E1 component n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YC55_NITMU rbh
SCNpilot_expt_500_p_scaffold_437_7
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7492..8910
DNA (1419bp) protein (473aa)
branched-chain alpha-keto acid dehydrogenase subunit E2; K00627 pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase) [EC:2.3.1.12] rbh
Acetyltransferase component of pyruvate dehydrogenase complex {ECO:0000256|RuleBase:RU361137}; EC=2.3.1.12 {ECO:0000256|RuleBase:RU361137};; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
Catalytic domain of components of various dehydrogenase complexes n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YC54_NITMU rbh
SCNpilot_expt_500_p_scaffold_437_8
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8971..9681
DNA (711bp) protein (237aa)
Probable nicotinate-nucleotide adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00244}; EC=2.7.7.18 {ECO:0000256|HAMAP-Rule:MF_00244, ECO:0000256|SAAS:SAAS00086517};; Deamido-NAD(+) diphosphorylase {ECO:0000256|HAMAP-Rule:MF_00244}; Deamido-NAD(+) pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00244}; Nicotinate mononucleotide adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00244}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitr
nicotinate-nucleotide adenylyltransferase (EC:2.7.7.18); K00969 nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18]
Probable nicotinate-nucleotide adenylyltransferase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DHJ1_9PROT
SCNpilot_expt_500_p_scaffold_437_9
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9678..10151
DNA (474bp) protein (158aa)
Ribosomal silencing factor RsfS n=1 Tax=Nitrosospira sp. APG3 RepID=M5DJA9_9PROT
Ribosomal silencing factor RsfS {ECO:0000256|HAMAP-Rule:MF_01477}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
Iojap-like protein; K09710 ribosome-associated protein
SCNpilot_expt_500_p_scaffold_437_10
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10156..10623
DNA (468bp) protein (156aa)
Ribosomal RNA large subunit methyltransferase H {ECO:0000256|HAMAP-Rule:MF_00658}; EC=2.1.1.177 {ECO:0000256|HAMAP-Rule:MF_00658};; 23S rRNA (pseudouridine1915-N3)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00658}; 23S rRNA m3Psi1915 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00658}; rRNA (pseudouridine-N3-)-methyltransferase RlmH {ECO:0000256|HAMAP-Rule:MF_00658}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospi
hypothetical protein; K00783 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
Ribosomal RNA large subunit methyltransferase H n=1 Tax=Nitrosospira sp. APG3 RepID=M5DJT9_9PROT
SCNpilot_expt_500_p_scaffold_437_11
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10637..11260
DNA (624bp) protein (208aa)
Maf-like protein Nmul_A0363 n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Y363_NITMU
Maf-like protein SQ11_04730 {ECO:0000256|HAMAP-Rule:MF_00528}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
maf protein; K06287 septum formation protein
SCNpilot_expt_500_p_scaffold_437_12
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11301..12752
DNA (1452bp) protein (484aa)
ribonuclease; K08301 ribonuclease G [EC:3.1.26.-] rbh
Cytoplasmic axial filament protein CafA and Ribonuclease G n=1 Tax=Nitrosospira sp. APG3 RepID=M5DTT1_9PROT rbh
Ribonuclease G {ECO:0000313|EMBL:KIO49710.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
SCNpilot_expt_500_p_scaffold_437_13
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12779..13990)
DNA (1212bp) protein (404aa)
Ammonium transporter n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YBP7_NITMU rbh
Rh-like protein/ammonium transporter; K06580 ammonium transporter Rh rbh
Ammonium transporter {ECO:0000313|EMBL:ABB73824.1}; Flags: Precursor;; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
SCNpilot_expt_500_p_scaffold_437_14
unknown

Not on your lists

14034..14207
DNA (174bp) protein (58aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_437_15
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14138..14902)
DNA (765bp) protein (255aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DJB2_9PROT rbh
Uncharacterized protein {ECO:0000313|EMBL:KIO49708.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
hypothetical protein rbh
SCNpilot_expt_500_p_scaffold_437_16
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14935..15687)
DNA (753bp) protein (251aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DJU3_9PROT rbh
Uncharacterized protein {ECO:0000313|EMBL:CCU62763.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
hypothetical protein rbh
SCNpilot_expt_500_p_scaffold_437_17
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15742..16434
DNA (693bp) protein (231aa)
ABC transporter-like protein; K09810 lipoprotein-releasing system ATP-binding protein [EC:3.6.3.-] rbh
ABC transporter related protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YC46_NITMU rbh
ABC transporter related protein {ECO:0000313|EMBL:ABB73675.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
SCNpilot_expt_500_p_scaffold_437_18
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16657..18156
DNA (1500bp) protein (500aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DTT6_9PROT rbh
Uncharacterized protein {ECO:0000313|EMBL:CCU62765.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
hypothetical protein rbh
SCNpilot_expt_500_p_scaffold_437_19
Nitrosomonas eutropha, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18206..19417)
DNA (1212bp) protein (404aa)
Uncharacterized protein n=1 Tax=Nitrosomonas eutropha (strain C91) RepID=Q0AID0_NITEC rbh
hypothetical protein; K02004 putative ABC transport system permease protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ABI58902.1}; Flags: Precursor;; TaxID=335283 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas eutropha (strain C91).;"
SCNpilot_expt_500_p_scaffold_437_20
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19427..20653)
DNA (1227bp) protein (409aa)
Uncharacterized protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YC43_NITMU rbh
hypothetical protein; K02004 putative ABC transport system permease protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ABB73678.1}; Flags: Precursor;; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
SCNpilot_expt_500_p_scaffold_437_21
Candidatus Accumulibacter phosphatis, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20774..22000
DNA (1227bp) protein (409aa)
Glycosyltransferase 28 domain protein n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RU37_ACCPU rbh
Glycosyltransferase 28 domain-containing protein rbh
Glycosyltransferase 28 domain protein {ECO:0000313|EMBL:ACV36201.1}; TaxID=522306 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Accumulibacter phosphatis (strain UW-1).;"
SCNpilot_expt_500_p_scaffold_437_22
unknown

Not on your lists

22214..23167
DNA (954bp) protein (318aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_437_23
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23255..23929)
DNA (675bp) protein (225aa)
Bacterial transferase hexapeptide repeat protein n=2 Tax=Nitrosococcus oceani RepID=B6BY76_9GAMM
Glycan acetyltransferase {ECO:0000313|EMBL:GAO34900.1}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
glycan acetyltransferase
SCNpilot_expt_500_p_scaffold_437_24
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24042..26093)
DNA (2052bp) protein (684aa)
UBA/THIF-type NAD/FAD binding fold protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YC39_NITMU rbh
UBA/THIF-type NAD/FAD binding domain-containing protein rbh
UBA/THIF-type NAD/FAD binding fold protein {ECO:0000313|EMBL:ABB73682.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
SCNpilot_expt_500_p_scaffold_437_25
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26403..27176)
DNA (774bp) protein (258aa)
Possible long-chain N-acyl amino acid synthase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DJ92_9PROT
Uncharacterized protein {ECO:0000313|EMBL:KIO50548.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
long-chain N-acyl amino acid synthase
SCNpilot_expt_500_p_scaffold_437_26
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27590..28372)
DNA (783bp) protein (261aa)
inositol monophosphatase; K01092 myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] rbh
Inositol-1-monophosphatase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DHK6_9PROT rbh
Inositol monophosphatase {ECO:0000313|EMBL:KIO50469.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
SCNpilot_expt_500_p_scaffold_437_27
Nitrosomonas communis, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28376..28933)
DNA (558bp) protein (186aa)
Uncharacterized protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YC35_NITMU rbh
Alkyl hydroperoxide reductase {ECO:0000313|EMBL:AKH38355.1}; TaxID=44574 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas communis.;"
hypothetical protein rbh
SCNpilot_expt_500_p_scaffold_437_28
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29078..29917
DNA (840bp) protein (280aa)
Ribosomal RNA small subunit methyltransferase E {ECO:0000256|PIRNR:PIRNR015601}; EC=2.1.1.193 {ECO:0000256|PIRNR:PIRNR015601};; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
16S ribosomal RNA methyltransferase RsmE; K09761 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
Ribosomal RNA small subunit methyltransferase E n=1 Tax=Nitrosospira sp. APG3 RepID=M5DJV4_9PROT
SCNpilot_expt_500_p_scaffold_437_29
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29997..31352
DNA (1356bp) protein (452aa)
Amino-acid acetyltransferase {ECO:0000256|HAMAP-Rule:MF_01105}; EC=2.3.1.1 {ECO:0000256|HAMAP-Rule:MF_01105};; N-acetylglutamate synthase {ECO:0000256|HAMAP-Rule:MF_01105}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
N-acetylglutamate synthase (EC:2.3.1.1); K14682 amino-acid N-acetyltransferase [EC:2.3.1.1] rbh
Amino-acid acetyltransferase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DTV0_9PROT rbh
SCNpilot_expt_500_p_scaffold_437_30
unknown

Not on your lists

comp(31305..31430)
DNA (126bp) protein (42aa)

This feature has no annotations

Displaying items 1-30 of 77 in total

View Taxonomy