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SCNpilot_expt_500_p_scaffold_687

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_687_1
unknown

Not on your lists

1..213
DNA (213bp) protein (71aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_687_2
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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1090..1881
DNA (792bp) protein (264aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DKU4_9PROT rbh
Uncharacterized protein {ECO:0000313|EMBL:CCU63539.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
hypothetical protein rbh
SCNpilot_expt_500_p_scaffold_687_3
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2134..2523
DNA (390bp) protein (130aa)
COGs COG0226 n=1 Tax=Nitrosospira sp. APG3 RepID=M5DW38_9PROT
Uncharacterized protein {ECO:0000313|EMBL:KIO49069.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_687_4
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2504..3766
DNA (1263bp) protein (421aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DJE2_9PROT rbh
Uncharacterized protein {ECO:0000313|EMBL:CCU63541.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
hypothetical protein rbh
SCNpilot_expt_500_p_scaffold_687_5
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3778..6708
DNA (2931bp) protein (977aa)
Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(S) n=1 Tax=Nitrosospira sp. APG3 RepID=M5DKW8_9PROT rbh
Diguanylate cyclase {ECO:0000313|EMBL:KIO49010.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
diguanylate cyclase/phosphodiesterase rbh
SCNpilot_expt_500_p_scaffold_687_6
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(6793..8154)
DNA (1362bp) protein (454aa)
Putative sensory histidine kinase YfhA n=1 Tax=Nitrosospira sp. APG3 RepID=M5DK59_9PROT rbh
Putative sensory histidine kinase YfhA {ECO:0000313|EMBL:CCU63172.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
two component sigma-54 specific Fis family transcriptional regulator rbh
SCNpilot_expt_500_p_scaffold_687_7
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8165..8701)
DNA (537bp) protein (179aa)
Uncharacterized protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y9V8_NITMU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABB74463.1}; Flags: Precursor;; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
SCNpilot_expt_500_p_scaffold_687_8
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8692..10203)
DNA (1512bp) protein (504aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
periplasmic sensor signal transduction histidine kinase; K07711 two-component system, NtrC family, sensor histidine kinase GlrK [EC:2.7.13.3] rbh
Putative sensor-like histidine kinase YfhK n=1 Tax=Nitrosospira sp. APG3 RepID=M5DUZ1_9PROT rbh
SCNpilot_expt_500_p_scaffold_687_9
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11008..11361)
DNA (354bp) protein (118aa)
Arsenate reductase {ECO:0000256|RuleBase:RU362029}; EC=1.20.4.1 {ECO:0000256|RuleBase:RU362029};; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
arsenate reductase-like protein; K00537 arsenate reductase [EC:1.20.4.1]
Arsenate reductase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DKR0_9PROT
SCNpilot_expt_500_p_scaffold_687_10
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11420..13129)
DNA (1710bp) protein (570aa)
TrkA-N:Sodium/hydrogen exchanger n=1 Tax=Nitrosospira sp. APG3 RepID=M5DII6_9PROT rbh
Sodium:proton antiporter {ECO:0000313|EMBL:KIO48924.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
TrkA-N:Sodium/hydrogen exchanger; K03455 monovalent cation:H+ antiporter-2, CPA2 family rbh
SCNpilot_expt_500_p_scaffold_687_11
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13349..14266)
DNA (918bp) protein (306aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DK20_9PROT rbh
Uncharacterized protein {ECO:0000313|EMBL:KIO48990.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
peptidase M10A and M12B matrixin and adamalysin
SCNpilot_expt_500_p_scaffold_687_12
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14295..15404)
DNA (1110bp) protein (370aa)
Alanine dehydrogenase {ECO:0000256|PIRNR:PIRNR000183}; EC=1.4.1.1 {ECO:0000256|PIRNR:PIRNR000183};; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
alanine dehydrogenase; K00259 alanine dehydrogenase [EC:1.4.1.1] rbh
Alanine dehydrogenase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DKQ6_9PROT rbh
SCNpilot_expt_500_p_scaffold_687_13
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15614..16366)
DNA (753bp) protein (251aa)
Dienelactone hydrolase family protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y9W4_NITMU rbh
dienelactone hydrolase family protein rbh
Dienelactone hydrolase family protein {ECO:0000313|EMBL:ABB74457.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
SCNpilot_expt_500_p_scaffold_687_14
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16479..17858)
DNA (1380bp) protein (460aa)
NAD(P) transhydrogenase subunit beta {ECO:0000256|PIRNR:PIRNR000204}; EC=1.6.1.2 {ECO:0000256|PIRNR:PIRNR000204};; Nicotinamide nucleotide transhydrogenase subunit beta {ECO:0000256|PIRNR:PIRNR000204}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
NAD(P) transhydrogenase subunit beta; K00325 NAD(P) transhydrogenase subunit beta [EC:1.6.1.2] rbh
NAD(P) transhydrogenase subunit beta n=1 Tax=Nitrosospira sp. APG3 RepID=M5DII3_9PROT rbh
SCNpilot_expt_500_p_scaffold_687_15
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17862..18167)
DNA (306bp) protein (102aa)
transmembrane NAD(P) transhydrogenase (subunit alpha part 2); K00324 NAD(P) transhydrogenase subunit alpha [EC:1.6.1.2]
Probable transmembrane NAD(P) transhydrogenase (Alpha subunit part 2) n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y9W6_NITMU
Pyridine nucleotide transhydrogenase {ECO:0000313|EMBL:KIO48926.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
SCNpilot_expt_500_p_scaffold_687_16
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18211..19338)
DNA (1128bp) protein (376aa)
NAD(P)(+) transhydrogenase (EC:1.6.1.2); K00324 NAD(P) transhydrogenase subunit alpha [EC:1.6.1.2] rbh
NAD(P) transhydrogenase subunit alpha n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y9W7_NITMU rbh
NADP transhydrogenase subunit alpha {ECO:0000313|EMBL:KIO48927.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
SCNpilot_expt_500_p_scaffold_687_17
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19716..23195)
DNA (3480bp) protein (1160aa)
Uncharacterized protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y9W8_NITMU rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ABB74453.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
SCNpilot_expt_500_p_scaffold_687_18
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23668..24951)
DNA (1284bp) protein (428aa)
Sulfate adenylyltransferase subunit 1 {ECO:0000256|HAMAP-Rule:MF_00062, ECO:0000256|SAAS:SAAS00056000}; EC=2.7.7.4 {ECO:0000256|HAMAP-Rule:MF_00062, ECO:0000256|SAAS:SAAS00055979};; ATP-sulfurylase large subunit {ECO:0000256|HAMAP-Rule:MF_00062}; Sulfate adenylate transferase {ECO:0000256|HAMAP-Rule:MF_00062}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
Sulfate adenylyltransferase, large subunit (EC:2.7.7.4); K00956 sulfate adenylyltransferase subunit 1 [EC:2.7.7.4] rbh
Sulfate adenylyltransferase subunit 1 n=1 Tax=Nitrosospira sp. APG3 RepID=M5DK45_9PROT rbh
SCNpilot_expt_500_p_scaffold_687_19
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25040..26062)
DNA (1023bp) protein (341aa)
Sulfate adenylyltransferase {ECO:0000256|SAAS:SAAS00055732}; EC=2.7.7.4 {ECO:0000256|SAAS:SAAS00055732, ECO:0000313|EMBL:KIO48991.1};; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
sulfate adenylyltransferase subunit 2 (EC:2.7.7.4); K00957 sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] rbh
Sulfate adenylyltransferase subunit 2 n=1 Tax=Nitrosospira sp. APG3 RepID=M5DUX1_9PROT rbh
SCNpilot_expt_500_p_scaffold_687_20
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26071..26904)
DNA (834bp) protein (278aa)
Phosphoadenylyl-sulfate reductase [thioredoxin] / Adenylyl-sulfate reductase [thioredoxin] {ECO:0000313|EMBL:CCU63154.1}; EC=1.8.4.10 {ECO:0000313|EMBL:CCU63154.1};; EC=1.8.4.8 {ECO:0000313|EMBL:CCU63154.1};; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
phosphoadenosine phosphosulfate reductase (EC:1.8.4.8); K00390 phosphoadenosine phosphosulfate reductase [EC:1.8.4.8] rbh
Phosphoadenylyl-sulfate reductase [thioredoxin] / Adenylyl-sulfate reductase [thioredoxin] n=1 Tax=Nitrosospira sp. APG3 RepID=M5DK09_9PROT rbh
SCNpilot_expt_500_p_scaffold_687_21
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26953..29046)
DNA (2094bp) protein (698aa)
Ferredoxin--sulfite reductase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DKP7_9PROT rbh
Nitrite reductase {ECO:0000313|EMBL:KIO48931.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
nitrite and sulfite reductase 4Fe-4S region rbh
SCNpilot_expt_500_p_scaffold_687_22
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29232..30158
DNA (927bp) protein (309aa)
Cys regulon transcriptional activator CysB n=1 Tax=Nitrosospira sp. APG3 RepID=M5DK41_9PROT rbh
CysB family transcriptional regulator {ECO:0000313|EMBL:KIO48932.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
transcriptional regulator CysB-like protein; K13634 LysR family transcriptional regulator, cys regulon transcriptional activator rbh
SCNpilot_expt_500_p_scaffold_687_23
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30384..32264
DNA (1881bp) protein (627aa)
DNA mismatch repair protein MutL n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y9X4_NITMU rbh
DNA mismatch repair protein MutL {ECO:0000256|HAMAP-Rule:MF_00149, ECO:0000256|SAAS:SAAS00058680}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
DNA mismatch repair protein MutL; K03572 DNA mismatch repair protein MutL rbh
Displaying 23 items

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