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SCNpilot_expt_500_p_scaffold_702

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_702_1
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

446..2287
DNA (1842bp) protein (614aa)
ATP-dependent zinc metalloprotease FtsH {ECO:0000256|HAMAP-Rule:MF_01458}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_01458};; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
ATP-dependent metalloprotease FtsH (EC:3.6.4.6); K03798 cell division protease FtsH [EC:3.4.24.-] rbh
ATP-dependent zinc metalloprotease FtsH n=1 Tax=Nitrosospira sp. APG3 RepID=M5DH28_9PROT rbh
SCNpilot_expt_500_p_scaffold_702_2
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2708..4183
DNA (1476bp) protein (492aa)
ATP-dependent RNA helicase NGO0650 n=1 Tax=Nitrosospira sp. APG3 RepID=M5DT83_9PROT rbh
RNA helicase {ECO:0000313|EMBL:KIO49763.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
DEAD/DEAH box helicase-like protein rbh
SCNpilot_expt_500_p_scaffold_702_3
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4335..4721)
DNA (387bp) protein (129aa)
Hemoglobin-like protein HbO n=1 Tax=Nitrosospira sp. APG3 RepID=M5DIT5_9PROT
Hemoglobin-like protein HbO {ECO:0000313|EMBL:CCU62599.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
globin family protein; K06886 hemoglobin
SCNpilot_expt_500_p_scaffold_702_4
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4817..6187)
DNA (1371bp) protein (457aa)
DNA repair protein radA n=1 Tax=Nitrosospira sp. APG3 RepID=M5DIX7_9PROT rbh
DNA repair protein radA {ECO:0000256|RuleBase:RU003555}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
DNA repair protein RadA; K04485 DNA repair protein RadA/Sms rbh
SCNpilot_expt_500_p_scaffold_702_5
Aquimarina atlantica, Aquimarina, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

6314..7039
DNA (726bp) protein (242aa)
putative Prolyl 4-hydroxylase alpha subunit (EC:1.14.11.2)
hypothetical protein n=1 Tax=Spirosoma spitsbergense RepID=UPI0003748EC3
Uncharacterized protein {ECO:0000313|EMBL:EZH75783.1}; TaxID=1317122 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Aquimarina.;" source="Aquimarina atlantica.;"
SCNpilot_expt_500_p_scaffold_702_6
unknown

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7063..7407
DNA (345bp) protein (115aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_702_7
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7602..9275
DNA (1674bp) protein (558aa)
Uncharacterized protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y817_NITMU rbh
MFS transporter {ECO:0000313|EMBL:KIO47849.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
hypothetical protein rbh
SCNpilot_expt_500_p_scaffold_702_8
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9346..10044
DNA (699bp) protein (233aa)
Pirin-like protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y816_NITMU rbh
pirin-like protein; K06911 rbh
Pirin-like protein {ECO:0000313|EMBL:ABB75105.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
SCNpilot_expt_500_p_scaffold_702_9
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10078..11463)
DNA (1386bp) protein (462aa)
hypothetical protein; K04075 tRNA(Ile)-lysidine synthase [EC:6.3.4.19] rbh
tRNA(Ile)-lysidine synthase {ECO:0000256|HAMAP-Rule:MF_01161, ECO:0000256|SAAS:SAAS00043109}; EC=6.3.4.19 {ECO:0000256|HAMAP-Rule:MF_01161, ECO:0000256|SAAS:SAAS00043112};; tRNA(Ile)-2-lysyl-cytidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; tRNA(Ile)-lysidine synthetase {ECO:0000256|HAMAP-Rule:MF_01161}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
tRNA(Ile)-lysidine synthase n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y815_NITMU rbh
SCNpilot_expt_500_p_scaffold_702_10
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11522..12490)
DNA (969bp) protein (323aa)
Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00823, ECO:0000256|SAAS:SAAS00176990}; Short=ACCase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00823};; Short=Acetyl-CoA carboxylase carboxyltransferase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00823};; EC=6.4.1.2 {ECO:0000256|HAMAP-Rule:MF_00823, ECO:0000256|SAAS:SAAS00057486};; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira
acetyl-CoA carboxylase, carboxyl transferase subunit alpha; K01962 acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2] rbh
Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha n=1 Tax=Nitrosospira sp. APG3 RepID=M5DIX1_9PROT rbh
SCNpilot_expt_500_p_scaffold_702_11
unknown

Not on your lists

12791..12880
DNA (90bp) protein (30aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_702_12
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12880..14688
DNA (1809bp) protein (603aa)
Potassium-transporting ATPase A chain {ECO:0000256|HAMAP-Rule:MF_00275}; EC=3.6.3.12 {ECO:0000256|HAMAP-Rule:MF_00275, ECO:0000256|SAAS:SAAS00088861};; ATP phosphohydrolase [potassium-transporting] A chain {ECO:0000256|HAMAP-Rule:MF_00275}; Potassium-binding and translocating subunit A {ECO:0000256|HAMAP-Rule:MF_00275}; Potassium-translocating ATPase A chain {ECO:0000256|HAMAP-Rule:MF_00275}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira
kdpA; potassium-transporting ATPase subunit A (EC:3.6.3.12); K01546 K+-transporting ATPase ATPase A chain [EC:3.6.3.12] rbh
Potassium-transporting ATPase A chain n=1 Tax=Janthinobacterium sp. (strain Marseille) RepID=ATKA_JANMA rbh
SCNpilot_expt_500_p_scaffold_702_13
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14701..16767
DNA (2067bp) protein (689aa)
Potassium-transporting ATPase B chain {ECO:0000256|HAMAP-Rule:MF_00285}; EC=3.6.3.12 {ECO:0000256|HAMAP-Rule:MF_00285, ECO:0000256|SAAS:SAAS00017871};; ATP phosphohydrolase [potassium-transporting] B chain {ECO:0000256|HAMAP-Rule:MF_00285}; Potassium-binding and translocating subunit B {ECO:0000256|HAMAP-Rule:MF_00285}; Potassium-translocating ATPase B chain {ECO:0000256|HAMAP-Rule:MF_00285}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira
kdpB; copper transporting ATPase (EC:3.6.3.4); K01547 K+-transporting ATPase ATPase B chain [EC:3.6.3.12] rbh
potassium-transporting ATPase subunit B n=1 Tax=Janthinobacterium sp. CG3 RepID=UPI0003476004 rbh
SCNpilot_expt_500_p_scaffold_702_14
Janthinobacterium sp. Marseille, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16777..17376
DNA (600bp) protein (200aa)
kdpC; potassium-transporting ATPase subunit C (EC:3.6.3.12); K01548 K+-transporting ATPase ATPase C chain [EC:3.6.3.12]
Potassium-transporting ATPase C chain {ECO:0000255|HAMAP-Rule:MF_00276}; EC=3.6.3.12 {ECO:0000255|HAMAP-Rule:MF_00276};; ATP phosphohydrolase [potassium-transporting] C chain {ECO:0000255|HAMAP-Rule:MF_00276}; Potassium-binding and translocating subunit C {ECO:0000255|HAMAP-Rule:MF_00276}; Potassium-translocating ATPase C chain {ECO:0000255|HAMAP-Rule:MF_00276}; TaxID=375286 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacteri
Potassium-transporting ATPase C chain n=1 Tax=Janthinobacterium sp. (strain Marseille) RepID=ATKC_JANMA
SCNpilot_expt_500_p_scaffold_702_15
Herminiimonas arsenicoxydans, Herminiimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17438..20200
DNA (2763bp) protein (921aa)
kdpD; sensory histidine kinase in two-component regulatory system wtih KdpE, regulation of potassium translocation; K07646 two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3] rbh
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121, ECO:0000313|EMBL:CAL61783.1};; TaxID=204773 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herminiimonas.;" source="Herminiimonas arsenicoxydans.;"
Sensor protein KdpD n=1 Tax=Herminiimonas arsenicoxydans RepID=A4G5J6_HERAR rbh
SCNpilot_expt_500_p_scaffold_702_16
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20270..20959
DNA (690bp) protein (230aa)
transcriptional regulator n=1 Tax=Janthinobacterium lividum RepID=UPI0002887546 rbh
Transcriptional regulator {ECO:0000313|EMBL:KIO49775.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
kdpE; DNA-binding response regulator KdpE; K07667 two-component system, OmpR family, KDP operon response regulator KdpE rbh
SCNpilot_expt_500_p_scaffold_702_17
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21364..22458
DNA (1095bp) protein (365aa)
Uncharacterized protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y790_NITMU rbh
Outer membrane protein {ECO:0000313|EMBL:KIO49778.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
hypothetical protein rbh
SCNpilot_expt_500_p_scaffold_702_18
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22630..24276
DNA (1647bp) protein (549aa)
ABC transporter, ATP-binding protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DH20_9PROT rbh
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:CCU62591.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
ABC transporter-like protein rbh
SCNpilot_expt_500_p_scaffold_702_19
Fulvivirga imtechensis, Fulvivirga, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

24730..27186
DNA (2457bp) protein (819aa)
Microbial collagenase n=1 Tax=Fulvivirga imtechensis AK7 RepID=L8JZ12_9BACT
Microbial collagenase {ECO:0000313|EMBL:ELR73413.1}; TaxID=1237149 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Flammeovirgaceae; Fulvivirga.;" source="Fulvivirga imtechensis AK7.;"
peptidase S8 and S53 subtilisin kexin sedolisin
SCNpilot_expt_500_p_scaffold_702_20
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27344..27907)
DNA (564bp) protein (188aa)
Negative regulator of AmpC, AmpD n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y812_NITMU
N-acetyl-anhydromuranmyl-L-alanine amidase {ECO:0000313|EMBL:KIO49780.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
N-acetyl-anhydromuranmyl-L-alanine amidase; K03806 AmpD protein
SCNpilot_expt_500_p_scaffold_702_21
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28003..28239)
DNA (237bp) protein (79aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DIS7_9PROT
Uncharacterized protein {ECO:0000313|EMBL:KIO49781.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
hypothetical protein; K06950 uncharacterized protein
SCNpilot_expt_500_p_scaffold_702_22
unknown

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28601..28897
DNA (297bp) protein (99aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_702_23
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28823..31480)
DNA (2658bp) protein (886aa)
Uncharacterized protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y8Q4_NITMU rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ABB74867.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
Displaying 23 items

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