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SCNpilot_expt_500_p_scaffold_793

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_793_1
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(263..976)
DNA (714bp) protein (238aa)
Integrase, catalytic region n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YCP5_NITMU rbh
integrase catalytic subunit rbh
Integrase, catalytic region {ECO:0000313|EMBL:ABB73476.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
SCNpilot_expt_500_p_scaffold_793_2
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1290..1490)
DNA (201bp) protein (67aa)
Uncharacterized protein {ECO:0000313|EMBL:KIO49286.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
SCNpilot_expt_500_p_scaffold_793_3
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1531..1995
DNA (465bp) protein (155aa)
Bacterioferritin n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y6D6_NITMU
bacterioferritin; K03594 bacterioferritin
Bacterioferritin {ECO:0000256|RuleBase:RU000623}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
SCNpilot_expt_500_p_scaffold_793_4
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2294..3586
DNA (1293bp) protein (431aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DJN6_9PROT rbh
Uncharacterized protein {ECO:0000313|EMBL:CCU62703.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
TIGR03118 family protein rbh
SCNpilot_expt_500_p_scaffold_793_5
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3581..5800)
DNA (2220bp) protein (740aa)
Lead, cadmium, zinc and mercury transporting ATPase Copper-translocating P-type ATPase {ECO:0000313|EMBL:CCU62526.1}; EC=3.6.3.3 {ECO:0000313|EMBL:CCU62526.1};; EC=3.6.3.4 {ECO:0000313|EMBL:CCU62526.1};; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
copper-translocating P-type ATPase (EC:3.6.3.4) rbh
Lead, cadmium, zinc and mercury transporting ATPase Copper-translocating P-type ATPase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DGW6_9PROT rbh
SCNpilot_expt_500_p_scaffold_793_6
unknown

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comp(5821..5967)
DNA (147bp) protein (49aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_793_7
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6017..6343)
DNA (327bp) protein (109aa)
Uncharacterized protein n=1 Tax=Janthinobacterium sp. HH01 RepID=L9P9S4_9BURK
Uncharacterized protein {ECO:0000313|EMBL:KIO48688.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_793_8
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6495..6845)
DNA (351bp) protein (117aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DSZ5_9PROT
Uncharacterized protein {ECO:0000313|EMBL:CCU62525.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_793_9
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6987..10112)
DNA (3126bp) protein (1042aa)
Cobalt-zinc-cadmium resistance protein CzcA Cation efflux system protein CusA n=1 Tax=Nitrosospira sp. APG3 RepID=M5DIM3_9PROT rbh
Cation transporter {ECO:0000313|EMBL:KIO48135.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
CzcA family heavy metal efflux pump; K07787 Cu(I)/Ag(I) efflux system membrane protein CusA rbh
SCNpilot_expt_500_p_scaffold_793_10
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10112..11764)
DNA (1653bp) protein (551aa)
Probable Co/Zn/Cd efflux system membrane fusion protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DJ49_9PROT rbh
RND transporter {ECO:0000313|EMBL:KIO48136.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
RND family efflux transporter MFP subunit; K07798 Cu(I)/Ag(I) efflux system membrane protein CusB rbh
SCNpilot_expt_500_p_scaffold_793_11
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11813..13390)
DNA (1578bp) protein (526aa)
Heavy metal RND efflux outer membrane protein,CzcC family n=1 Tax=Nitrosospira sp. APG3 RepID=M5DIR3_9PROT rbh
Transporter {ECO:0000313|EMBL:KIO48137.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
Outer membrane efflux protein rbh
SCNpilot_expt_500_p_scaffold_793_12
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13692..14105)
DNA (414bp) protein (138aa)
Uncharacterized protein {ECO:0000313|EMBL:KIO48687.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
SCNpilot_expt_500_p_scaffold_793_13
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14400..14825
DNA (426bp) protein (142aa)
RNA polymerase-binding transcription factor DksA n=1 Tax=Thauera linaloolentis 47Lol = DSM 12138 RepID=N6YNM4_9RHOO
RNA polymerase-binding transcription factor DksA {ECO:0000256|HAMAP-Rule:MF_00926}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
dksA1; dnaK suppressor protein; K06204 DnaK suppressor protein
SCNpilot_expt_500_p_scaffold_793_14
Candidatus Contendobacter odensis, Candidatus Contendobacter, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(14970..16211)
DNA (1242bp) protein (414aa)
hypothetical protein n=1 Tax=Methylovulum miyakonense RepID=UPI00036E79BA rbh
Uncharacterized protein {ECO:0000313|EMBL:CDH47034.1}; TaxID=1400861 species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Contendobacter.;" source="Candidatus Contendobacter odensis Run_B_J11.;"
SCNpilot_expt_500_p_scaffold_793_15
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16680..17381
DNA (702bp) protein (234aa)
Predicted zinc-binding protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DGR0_9PROT
Uncharacterized protein {ECO:0000313|EMBL:KIO48113.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
metal ion ABC transporter periplasmic protein surface adhesin
SCNpilot_expt_500_p_scaffold_793_16
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17417..18115
DNA (699bp) protein (233aa)
phosphonate-transporting ATPase (EC:3.6.3.28); K02003 putative ABC transport system ATP-binding protein
Methionine ABC transporter ATP-binding protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DIL6_9PROT rbh
Methionine ABC transporter ATP-binding protein {ECO:0000313|EMBL:CCU62457.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
SCNpilot_expt_500_p_scaffold_793_17
Methylophilaceae bacterium 11, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18519..20126
DNA (1608bp) protein (536aa)
nuclease PIN n=1 Tax=Methylotenera sp. 1P/1 RepID=UPI0003791522 rbh
Phosphate/sulfate permease {ECO:0000313|EMBL:EUJ10604.1}; TaxID=1101195 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae.;" source="Methylophilaceae bacterium 11.;"
putative phosphate transporter; K03306 inorganic phosphate transporter, PiT family
SCNpilot_expt_500_p_scaffold_793_18
Leptonema illini, Leptonema, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

20145..21071
DNA (927bp) protein (309aa)
Polyphosphate kinase 2 n=1 Tax=Leptonema illini DSM 21528 RepID=H2CKD6_9LEPT rbh
Polyphosphate kinase 2 {ECO:0000313|EMBL:EHQ08241.1}; TaxID=929563 species="Bacteria; Spirochaetes; Leptospirales; Leptospiraceae; Leptonema.;" source="Leptonema illini DSM 21528.;"
hypothetical protein rbh
SCNpilot_expt_500_p_scaffold_793_19
unknown

Not on your lists

comp(21455..21982)
DNA (528bp) protein (176aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_793_20
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22647..23132
DNA (486bp) protein (162aa)
Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) n=1 Tax=Nitrosospira sp. APG3 RepID=M5DIZ4_9PROT
Protein sphX {ECO:0000313|EMBL:KIO48115.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
phosphate binding protein; K02040 phosphate transport system substrate-binding protein
SCNpilot_expt_500_p_scaffold_793_21
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23251..24447
DNA (1197bp) protein (399aa)
ABC-type antimicrobial peptide transport system,permease component n=1 Tax=Nitrosospira sp. APG3 RepID=M5DIH4_9PROT rbh
ABC-type antimicrobial peptide transport system,permease component {ECO:0000313|EMBL:CCU62459.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
hypothetical protein; K02004 putative ABC transport system permease protein
SCNpilot_expt_500_p_scaffold_793_22
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24461..25156
DNA (696bp) protein (232aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DST0_9PROT
Uncharacterized protein {ECO:0000313|EMBL:KIO48116.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
hypothetical protein; K09950 hypothetical protein
SCNpilot_expt_500_p_scaffold_793_23
unknown

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comp(25472..25567)
DNA (96bp) protein (32aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_793_24
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25796..26740
DNA (945bp) protein (315aa)
Uncharacterized protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y894_NITMU rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ABB75027.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
SCNpilot_expt_500_p_scaffold_793_25
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26782..28515
DNA (1734bp) protein (578aa)
Cobalt-zinc-cadmium resistance protein CzcA Cation efflux system protein CusA n=1 Tax=Nitrosospira sp. APG3 RepID=M5DKN0_9PROT
Cobalt-zinc-cadmium resistance protein CzcA Cation efflux system protein CusA {ECO:0000313|EMBL:CCU63444.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
AcrB/AcrD/AcrF family protein
Displaying 25 items

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