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SCNpilot_expt_500_p_scaffold_923

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_923_1
unknown

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3..158
DNA (156bp) protein (52aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_923_2
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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329..1603
DNA (1275bp) protein (425aa)
hypothetical protein n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001745B84
Uncharacterized protein {ECO:0000313|EMBL:EEF62673.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_923_3
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1668..1952)
DNA (285bp) protein (95aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DHA7_9PROT
Uncharacterized protein {ECO:0000313|EMBL:KIO48364.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_923_4
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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2565..3770
DNA (1206bp) protein (402aa)
Transporter, monovalent cation:proton antiporter-2 (CPA2) family n=1 Tax=Nitrosospira sp. APG3 RepID=M5DLA5_9PROT rbh
Sodium:proton exchanger {ECO:0000313|EMBL:KIO48897.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
Sodium/hydrogen exchanger rbh
SCNpilot_expt_500_p_scaffold_923_5
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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3767..4882
DNA (1116bp) protein (372aa)
Putative glutamate--cysteine ligase 2 {ECO:0000256|HAMAP-Rule:MF_01609}; EC=6.3.2.2 {ECO:0000256|HAMAP-Rule:MF_01609, ECO:0000256|SAAS:SAAS00078222};; Gamma-glutamylcysteine synthetase 2 {ECO:0000256|HAMAP-Rule:MF_01609}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
carboxylate-amine ligase; K06048 carboxylate-amine ligase [EC:6.3.-.-] rbh
Carboxylate-amine ligase EBAPG3_24820 n=1 Tax=Nitrosospira sp. APG3 RepID=M5DKM6_9PROT rbh
SCNpilot_expt_500_p_scaffold_923_6
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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5107..5880
DNA (774bp) protein (258aa)
Glutamine amidotransferase, class I n=1 Tax=Nitrosospira sp. APG3 RepID=M5DVT0_9PROT rbh
Glutamine amidotransferase, class I {ECO:0000313|EMBL:CCU63440.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
peptidase C26; K07010 putative glutamine amidotransferase rbh
SCNpilot_expt_500_p_scaffold_923_7
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(5958..7421)
DNA (1464bp) protein (488aa)
Threonine synthase {ECO:0000313|EMBL:CCU63450.1}; EC=4.2.3.1 {ECO:0000313|EMBL:CCU63450.1};; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
threonine synthase (EC:4.2.3.1); K01733 threonine synthase [EC:4.2.3.1] rbh
Threonine synthase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DVT9_9PROT rbh
SCNpilot_expt_500_p_scaffold_923_8
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(7543..8913)
DNA (1371bp) protein (457aa)
Homoserine dehydrogenase {ECO:0000256|RuleBase:RU000579}; EC=1.1.1.3 {ECO:0000256|RuleBase:RU000579};; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
homoserine dehydrogenase (EC:1.1.1.3); K00003 homoserine dehydrogenase [EC:1.1.1.3] rbh
Homoserine dehydrogenase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DJ63_9PROT rbh
SCNpilot_expt_500_p_scaffold_923_9
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(8936..10228)
DNA (1293bp) protein (431aa)
Aspartate aminotransferase {ECO:0000313|EMBL:CCU63452.1}; EC=2.6.1.1 {ECO:0000313|EMBL:CCU63452.1};; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
aminotransferase AlaT (EC:2.6.1.2); K14260 alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2] rbh
Aspartate aminotransferase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DKR1_9PROT rbh
SCNpilot_expt_500_p_scaffold_923_10
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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10390..10755
DNA (366bp) protein (122aa)
Membrane protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DKN6_9PROT
Membrane protein {ECO:0000313|EMBL:CCU63454.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
hypothetical protein; K09008 hypothetical protein
SCNpilot_expt_500_p_scaffold_923_11
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(10810..12000)
DNA (1191bp) protein (397aa)
Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(S) n=1 Tax=Nitrosospira sp. APG3 RepID=M5DVU5_9PROT rbh
Histidine kinase {ECO:0000313|EMBL:KIO48903.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
response regulator receiver/diguanylate phosphodiesterase rbh
SCNpilot_expt_500_p_scaffold_923_12
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12277..16449)
DNA (4173bp) protein (1391aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
multi-sensor hybrid histidine kinase rbh
SCNpilot_expt_500_p_scaffold_923_13
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16446..17723)
DNA (1278bp) protein (426aa)
Urea ABC transporter, urea binding protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DLB9_9PROT rbh
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KIO48905.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
ABC transporter, periplasmic binding protein; K01999 branched-chain amino acid transport system substrate-binding protein rbh
SCNpilot_expt_500_p_scaffold_923_14
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17968..18912)
DNA (945bp) protein (315aa)
Deacetylases, including yeast histone deacetylase and acetoin utilization protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DKN9_9PROT rbh
Deacetylases, including yeast histone deacetylase and acetoin utilization protein {ECO:0000313|EMBL:CCU63459.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
histone deacetylase superfamily protein rbh
SCNpilot_expt_500_p_scaffold_923_15
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19309..21249
DNA (1941bp) protein (647aa)
GGDEF and EAL domain proteins n=1 Tax=Nitrosospira sp. APG3 RepID=M5DVV0_9PROT rbh
Diguanylate cyclase {ECO:0000313|EMBL:KIO48907.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
diguanylate cyclase/phosphodiesterase rbh
SCNpilot_expt_500_p_scaffold_923_16
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21421..23577
DNA (2157bp) protein (719aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DJ72_9PROT rbh
Uncharacterized protein {ECO:0000313|EMBL:KIO48908.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
hypothetical protein rbh
SCNpilot_expt_500_p_scaffold_923_17
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

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23684..24703
DNA (1020bp) protein (340aa)
fructose-bisphosphate aldolase (EC:4.1.2.13); K01623 fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
Fructose-bisphosphate aldolase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DKR7_9PROT
Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
SCNpilot_expt_500_p_scaffold_923_18
unknown

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comp(24740..24853)
DNA (114bp) protein (38aa)

This feature has no annotations

Displaying 18 items

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