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SCNpilot_expt_500_p_scaffold_2060

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_2060_1
unknown

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comp(148..792)
DNA (645bp) protein (215aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_2060_2
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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1427..2596
DNA (1170bp) protein (390aa)
2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DL99_9PROT rbh
Ubiquinone biosynthesis protein UbiH {ECO:0000313|EMBL:KIO49463.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family rbh
SCNpilot_expt_500_p_scaffold_2060_3
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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2652..3365
DNA (714bp) protein (238aa)
putative thiol:disulfide interchange protein; K03981 thiol:disulfide interchange protein DsbC [EC:5.3.4.1] rbh
Thiol:disulfide interchange protein DsbC n=1 Tax=Nitrosospira sp. APG3 RepID=M5DLZ0_9PROT rbh
Thiol:disulfide interchange protein {ECO:0000313|EMBL:KIO49320.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
SCNpilot_expt_500_p_scaffold_2060_4
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3492..4700)
DNA (1209bp) protein (403aa)
MltA; K08304 membrane-bound lytic murein transglycosylase A [EC:3.2.1.-] rbh
Membrane-bound lytic murein transglycosylase A n=1 Tax=Nitrosospira sp. APG3 RepID=M5DL75_9PROT rbh
Transglycosylase {ECO:0000313|EMBL:KIO49321.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
SCNpilot_expt_500_p_scaffold_2060_5
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4742..4873
DNA (132bp) protein (44aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DWV2_9PROT
Uncharacterized protein {ECO:0000313|EMBL:CCU63715.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
SCNpilot_expt_500_p_scaffold_2060_6
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5039..6382
DNA (1344bp) protein (448aa)
glutamate dehydrogenase (EC:1.4.1.4); K00262 glutamate dehydrogenase (NADP+) [EC:1.4.1.4] rbh
Glutamate dehydrogenase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DJV6_9PROT rbh
Glutamate dehydrogenase {ECO:0000256|PIRNR:PIRNR000185, ECO:0000313|EMBL:KIO49322.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
SCNpilot_expt_500_p_scaffold_2060_7
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6395..7759)
DNA (1365bp) protein (455aa)
aldehyde dehydrogenase; K00135 succinate-semialdehyde dehydrogenase (NADP+) [EC:1.2.1.16] rbh
Succinate-semialdehyde dehydrogenase [NAD] Succinate-semialdehyde dehydrogenase [NADP+] n=1 Tax=Nitrosospira sp. APG3 RepID=M5DLA3_9PROT rbh
Succinate-semialdehyde dehydrogenase {ECO:0000313|EMBL:KIO49323.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
SCNpilot_expt_500_p_scaffold_2060_8
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7909..9852
DNA (1944bp) protein (648aa)
lytic transglycosylase catalytic subunit; K08309 soluble lytic murein transglycosylase [EC:3.2.1.-] rbh
Soluble lytic murein transglycosylase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DLZ5_9PROT rbh
Transglycosylase {ECO:0000313|EMBL:KIO49324.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
SCNpilot_expt_500_p_scaffold_2060_9
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9849..10790
DNA (942bp) protein (314aa)
NAD-dependent epimerase/dehydratase; K00329 NADH dehydrogenase [EC:1.6.5.3]; K00356 NADH dehydrogenase [EC:1.6.99.3] rbh
NAD-dependent epimerase/dehydratase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DL79_9PROT rbh
NAD-dependent epimerase/dehydratase {ECO:0000313|EMBL:CCU63719.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
SCNpilot_expt_500_p_scaffold_2060_10
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10812..12047
DNA (1236bp) protein (412aa)
cca; multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase (EC:2.7.7.25 2.7.7.21); K00974 tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-] rbh
Multifunctional CCA protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DWW0_9PROT rbh
Multifunctional CCA protein {ECO:0000256|HAMAP-Rule:MF_01261}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
SCNpilot_expt_500_p_scaffold_2060_11
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12095..12733)
DNA (639bp) protein (213aa)
Thiol:disulfide interchange protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y678_NITMU rbh
Thiol:disulfide interchange protein {ECO:0000256|PIRNR:PIRNR001488}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
DSBA oxidoreductase; K03673 thiol:disulfide interchange protein DsbA rbh
SCNpilot_expt_500_p_scaffold_2060_12
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12808..13275)
DNA (468bp) protein (156aa)
Cell division protein FtsN n=1 Tax=Nitrosospira sp. APG3 RepID=M5DWX1_9PROT
Cell division protein FtsN {ECO:0000313|EMBL:CCU63725.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
sporulation related
Displaying 12 items

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