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SCNpilot_expt_500_p_scaffold_4032

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_4032_1
unknown

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3..128
DNA (126bp) protein (42aa)
SCNpilot_expt_500_p_scaffold_4032_2
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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146..1474
DNA (1329bp) protein (443aa)
Protein translocase subunit SecY n=1 Tax=Nitrosospira sp. APG3 RepID=M5DKE0_9PROT rbh
Protein translocase subunit SecY {ECO:0000256|HAMAP-Rule:MF_01465}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
secY; preprotein translocase subunit SecY; K03076 preprotein translocase subunit SecY rbh
SCNpilot_expt_500_p_scaffold_4032_3
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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1489..1707
DNA (219bp) protein (73aa)
Translation initiation factor IF-1 n=1 Tax=Nitrosospira sp. APG3 RepID=M5DLV1_9PROT
infA; translation initiation factor IF-1; K02518 translation initiation factor IF-1
Translation initiation factor IF-1 {ECO:0000256|HAMAP-Rule:MF_00075}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
SCNpilot_expt_500_p_scaffold_4032_4
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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1892..2272
DNA (381bp) protein (127aa)
30S ribosomal protein S13 n=1 Tax=Nitrosospira sp. APG3 RepID=M5DLQ8_9PROT
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315, ECO:0000313|EMBL:KIO47970.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
rpsM; 30S ribosomal protein S13; K02952 small subunit ribosomal protein S13
SCNpilot_expt_500_p_scaffold_4032_5
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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2312..2701
DNA (390bp) protein (130aa)
30S ribosomal protein S11 n=1 Tax=Nitrosospira sp. APG3 RepID=M5DXH0_9PROT
30S ribosomal protein S11 {ECO:0000256|HAMAP-Rule:MF_01310}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
30S ribosomal protein S11; K02948 small subunit ribosomal protein S11
SCNpilot_expt_500_p_scaffold_4032_6
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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2711..3337
DNA (627bp) protein (209aa)
30S ribosomal protein S4 n=1 Tax=Nitrosospira sp. APG3 RepID=M5DKE4_9PROT rbh
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306, ECO:0000313|EMBL:KIO47978.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
rpsD; 30S ribosomal protein S4; K02986 small subunit ribosomal protein S4 rbh
SCNpilot_expt_500_p_scaffold_4032_7
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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3372..4376
DNA (1005bp) protein (335aa)
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Transcriptase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6); K03040 DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] rbh
DNA-directed RNA polymerase subunit alpha n=1 Tax=Nitrosospira sp. APG3 RepID=M5DLV5_9PROT rbh
SCNpilot_expt_500_p_scaffold_4032_8
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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4363..4761
DNA (399bp) protein (133aa)
50S ribosomal protein L17 n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=RL17_NITMU
50S ribosomal protein L17; K02879 large subunit ribosomal protein L17
50S ribosomal protein L17 {ECO:0000256|HAMAP-Rule:MF_01368, ECO:0000256|RuleBase:RU000661}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
SCNpilot_expt_500_p_scaffold_4032_9
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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5003..5320
DNA (318bp) protein (106aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DLR2_9PROT
Uncharacterized protein {ECO:0000313|EMBL:CCU63954.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_4032_10
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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5412..5858
DNA (447bp) protein (149aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DXH5_9PROT
Uncharacterized protein {ECO:0000313|EMBL:KIO47975.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_4032_11
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(5927..7090)
DNA (1164bp) protein (388aa)
NADH dehydrogenase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DKF1_9PROT rbh
Pyridine nucleotide-disulfide oxidoreductase {ECO:0000313|EMBL:KIO47976.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
FAD-dependent pyridine nucleotide-disulfide oxidoreductase rbh
SCNpilot_expt_500_p_scaffold_4032_12
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(7203..8075)
DNA (873bp) protein (291aa)
Glutamyl-Q tRNA(Asp) synthetase {ECO:0000256|HAMAP-Rule:MF_01428, ECO:0000256|SAAS:SAAS00018238}; Short=Glu-Q-RSs {ECO:0000256|HAMAP-Rule:MF_01428};; EC=6.1.1.- {ECO:0000256|HAMAP-Rule:MF_01428, ECO:0000256|SAAS:SAAS00018222};; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
glutamate--tRNA ligase (EC:6.1.1.17); K01894 glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-] rbh
Glutamyl-Q tRNA(Asp) synthetase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DLV9_9PROT rbh
Displaying 12 items

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