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SCNpilot_expt_500_p_scaffold_1253

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_1253_1
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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2..967
DNA (966bp) protein (322aa)
ribonucleotide-diphosphate reductase subunit beta (EC:1.17.4.1); K00526 ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] id=12496835 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
ribonucleotide-diphosphate reductase subunit beta (EC:1.17.4.1); K00526 ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
Ribonucleoside-diphosphate reductase subunit beta {ECO:0000256|PIRNR:PIRNR000355}; EC=1.17.4.1 {ECO:0000256|PIRNR:PIRNR000355};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_500_p_scaffold_1253_2
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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974..1195
DNA (222bp) protein (74aa)
Putative uncharacterized protein n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SHF9_THIDA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ97927.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_500_p_scaffold_1253_3
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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1224..1439
DNA (216bp) protein (72aa)
Putative uncharacterized protein n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SHG0_THIDA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ97926.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_500_p_scaffold_1253_4
Acidiphilium sp. PM, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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2075..2821
DNA (747bp) protein (249aa)
Putative uncharacterized protein n=1 Tax=Acidiphilium sp. PM RepID=F7SAQ3_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EGO93873.1}; TaxID=1043206 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. PM.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_1253_5
Acidiphilium sp. PM, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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3165..3788
DNA (624bp) protein (208aa)
hypothetical protein APA22_41110 n=1 Tax=Acetobacter pasteurianus IFO 3283-22 RepID=UPI0001B5BF01
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EGO93873.1}; TaxID=1043206 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. PM.;"
SCNpilot_expt_500_p_scaffold_1253_6
Comamonadaceae bacterium A1, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(6001..6297)
DNA (297bp) protein (99aa)
cas2; CRISPR-associated protein Cas2 id=12496789 bin=THIO_MID species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=THIO_MID organism_group=Betaproteobacteria
CRISPR/Cas system-associated protein Cas2 {ECO:0000313|EMBL:BAO81046.1}; TaxID=1458425 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae.;" source="Comamonadaceae bacterium A1.;"
cas2; CRISPR-associated protein Cas2
SCNpilot_expt_500_p_scaffold_1253_7
Comamonadaceae bacterium A1, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(6278..7198)
DNA (921bp) protein (307aa)
CRISPR-associated endonuclease Cas1 {ECO:0000256|HAMAP-Rule:MF_01470}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01470};; TaxID=1458425 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae.;" source="Comamonadaceae bacterium A1.;"
cas1; CRISPR-associated protein Cas1; K15342 CRISP-associated protein Cas1 id=12496790 bin=THIO_MID species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=THIO_MID organism_group=Betaproteobacteria rbh
cas1; CRISPR-associated protein Cas1; K15342 CRISP-associated protein Cas1 rbh
SCNpilot_expt_500_p_scaffold_1253_8
Comamonadaceae bacterium A1, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(7198..7566)
DNA (369bp) protein (123aa)
hypothetical protein n=1 Tax=Lamprocystis purpurea RepID=UPI00036B30DA
Uncharacterized protein conserved in bacteria {ECO:0000313|EMBL:BAO81048.1}; TaxID=1458425 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae.;" source="Comamonadaceae bacterium A1.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_1253_9
Comamonadaceae bacterium A1, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(7563..7802)
DNA (240bp) protein (80aa)
hypothetical protein n=1 Tax=Lamprocystis purpurea RepID=UPI00037B3F42
Uncharacterized conserved protein {ECO:0000313|EMBL:BAO81049.1}; TaxID=1458425 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae.;" source="Comamonadaceae bacterium A1.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_1253_10
Pelobacter propionicus, Pelobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7901..8590)
DNA (690bp) protein (230aa)
CRISPR-associated protein, Cse3 family n=1 Tax=Pelobacter propionicus (strain DSM 2379) RepID=A1ARH5_PELPD
CRISPR-associated Cse3 family protein
CRISPR-associated protein, Cse3 family {ECO:0000313|EMBL:ABK99945.1}; TaxID=338966 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Pelobacteraceae; Pelobacter.;" source="Pelobacter propionicus (strain DSM 2379).;"
SCNpilot_expt_500_p_scaffold_1253_11
RIFOXYD12_FULL_Deltaproteobacteria_55_16_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(8577..9275)
DNA (699bp) protein (233aa)
CRISPR-associated protein, Cas5e family id=2215477 bin=GWB2_Proteobacteria_55_19 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Proteobacteria_55_19 organism_group=Proteobacteria organism_desc=Good rbh
CRISPR-associated Cas5 family protein rbh
Tax=RIFOXYD12_FULL_Deltaproteobacteria_55_16_curated
SCNpilot_expt_500_p_scaffold_1253_12
GWA2_Elusimicrobia_51_34_curated, Elusimicrobia, Bacteria

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comp(9279..10433)
DNA (1155bp) protein (385aa)
CRISPR-ssociated protein, Cas4 id=4606570 bin=GWC2_Elusimicrobia_51_8 species=unknown genus=Leptospirillum taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Elusimicrobia_51_8 organism_group=Elusimicrobia rbh
CRISPR-associated Cse4 family protein rbh
Tax=GWA2_Elusimicrobia_51_34_curated
SCNpilot_expt_500_p_scaffold_1253_13
Pelobacter propionicus, Pelobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10430..10945)
DNA (516bp) protein (172aa)
CRISPR-associated protein, Cse2 family n=1 Tax=Pelobacter propionicus (strain DSM 2379) RepID=A1ARH8_PELPD
CRISPR-associated Cse2 family protein
CRISPR-associated protein, Cse2 family {ECO:0000313|EMBL:ABK99948.1}; TaxID=338966 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Pelobacteraceae; Pelobacter.;" source="Pelobacter propionicus (strain DSM 2379).;"
SCNpilot_expt_500_p_scaffold_1253_14
Pelobacter propionicus, Pelobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10942..12489)
DNA (1548bp) protein (516aa)
CRISPR-associated protein, Cse1 family n=1 Tax=Pelobacter propionicus (strain DSM 2379) RepID=A1ARH9_PELPD rbh
CRISPR-associated Cse1 family protein rbh
CRISPR-associated protein, Cse1 family {ECO:0000313|EMBL:ABK99949.1}; TaxID=338966 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Pelobacteraceae; Pelobacter.;" source="Pelobacter propionicus (strain DSM 2379).;"
SCNpilot_expt_500_p_scaffold_1253_15
RIFOXYD12_FULL_Deltaproteobacteria_55_16_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12486..15161)
DNA (2676bp) protein (892aa)
CRISPR-associated helicase, Cas3 family n=1 Tax=Pelobacter propionicus (strain DSM 2379) RepID=A1ARI0_PELPD rbh
CRISPR-associated helicase Cas3; K07012 rbh
Tax=RIFOXYD12_FULL_Deltaproteobacteria_55_16_curated
SCNpilot_expt_500_p_scaffold_1253_16
Comamonadaceae bacterium A1, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15174..16178)
DNA (1005bp) protein (335aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000370B854 rbh
Predicted transcriptional regulator {ECO:0000313|EMBL:BAO81056.1}; TaxID=1458425 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae.;" source="Comamonadaceae bacterium A1.;"
hypothetical protein rbh
SCNpilot_expt_500_p_scaffold_1253_17
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16441..17523)
DNA (1083bp) protein (361aa)
L-alanine dehydrogenase (EC:1.4.1.1); K00259 alanine dehydrogenase [EC:1.4.1.1]
Alanine dehydrogenase {ECO:0000256|PIRNR:PIRNR000183}; EC=1.4.1.1 {ECO:0000256|PIRNR:PIRNR000183};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
alanine dehydrogenase n=1 Tax=Thiobacillus thioparus RepID=UPI00036495D6
SCNpilot_expt_500_p_scaffold_1253_18
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17591..18838)
DNA (1248bp) protein (416aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00035C5841
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_500_p_scaffold_1253_19
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18844..19671)
DNA (828bp) protein (276aa)
dihydroorotate dehydrogenase 2 (EC:1.3.3.1); K00226 dihydroorotate dehydrogenase (fumarate) [EC:1.3.98.1] rbh
dihydroorotate dehydrogenase n=1 Tax=Thiobacillus thioparus RepID=UPI000371B737 rbh
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
Displaying 19 items

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