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SCNpilot_expt_500_p_scaffold_3045

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_3045_1
unknown

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3..83
DNA (81bp) protein (27aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_3045_2
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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105..575
DNA (471bp) protein (157aa)
ribH; 6,7-dimethyl-8-ribityllumazine synthase (EC:2.5.1.9); K00794 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78] id=12494489 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
ribH; 6,7-dimethyl-8-ribityllumazine synthase (EC:2.5.1.9); K00794 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78]
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_500_p_scaffold_3045_3
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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577..1014
DNA (438bp) protein (146aa)
NusB antitermination factor; K03625 N utilization substance protein B id=12494490 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
NusB antitermination factor; K03625 N utilization substance protein B
N utilization substance protein B homolog {ECO:0000255|HAMAP-Rule:MF_00073}; Short=Protein NusB {ECO:0000255|HAMAP-Rule:MF_00073};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_500_p_scaffold_3045_4
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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1112..2065
DNA (954bp) protein (318aa)
thiamine-monophosphate kinase (EC:2.7.4.16); K00946 thiamine-monophosphate kinase [EC:2.7.4.16] id=12494491 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
thiamine-monophosphate kinase (EC:2.7.4.16); K00946 thiamine-monophosphate kinase [EC:2.7.4.16]
Thiamine-monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_02128}; Short=TMP kinase {ECO:0000256|HAMAP-Rule:MF_02128};; Short=Thiamine-phosphate kinase {ECO:0000256|HAMAP-Rule:MF_02128};; EC=2.7.4.16 {ECO:0000256|HAMAP-Rule:MF_02128};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_500_p_scaffold_3045_5
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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2055..2534
DNA (480bp) protein (160aa)
phosphatidylglycerophosphatase (EC:3.1.3.27); K01095 phosphatidylglycerophosphatase A [EC:3.1.3.27] id=12494492 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
phosphatidylglycerophosphatase (EC:3.1.3.27); K01095 phosphatidylglycerophosphatase A [EC:3.1.3.27]
Phosphatidylglycerophosphatase A {ECO:0000256|PIRNR:PIRNR006162}; EC=3.1.3.27 {ECO:0000256|PIRNR:PIRNR006162};; Phosphatidylglycerolphosphate phosphatase A {ECO:0000256|PIRNR:PIRNR006162}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_500_p_scaffold_3045_6
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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2522..3019
DNA (498bp) protein (166aa)
competence damage-inducible protein A n=1 Tax=Thiobacillus thioparus RepID=UPI00036EE38B
CinA protein; K03743
CinA protein {ECO:0000313|EMBL:AAZ98148.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_500_p_scaffold_3045_7
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3104..3976)
DNA (873bp) protein (291aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003780B4D
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_500_p_scaffold_3045_8
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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4180..5229
DNA (1050bp) protein (350aa)
recombinase RecA n=1 Tax=Thiobacillus thioparus RepID=UPI00037D51CF
recA; recombinase A; K03553 recombination protein RecA rbh
Protein RecA {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; Recombinase A {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_500_p_scaffold_3045_9
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5213..5671
DNA (459bp) protein (153aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000362BB10
putative regulatory protein RecX; K03565 regulatory protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_500_p_scaffold_3045_10
R_Rhodocyclales_63_24, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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5800..6039
DNA (240bp) protein (80aa)
Prevent host death protein n=1 Tax=Methyloversatilis universalis FAM5 RepID=F5RCE9_9RHOO
prevent host death protein
Tax=RIFCSPLOWO2_02_FULL_Rhodocyclales_63_24_curated
SCNpilot_expt_500_p_scaffold_3045_11
CG_Proteo_01, Proteobacteria, Bacteria

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6041..6427
DNA (387bp) protein (129aa)
twitching motility protein PilT n=1 Tax=Thiomonas sp. FB-6 RepID=UPI00035F6836
PIN domain-containing protein
Tax=CG_Proteo_01
SCNpilot_expt_500_p_scaffold_3045_12
RBG_16_Gammaproteobacteria_57_12_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6477..7187)
DNA (711bp) protein (237aa)
transposase IS200 n=1 Tax=Methylohalobius crimeensis RepID=UPI0003B326DF rbh
transposase-like protein
Tax=RBG_16_Gammaproteobacteria_57_12_curated
SCNpilot_expt_500_p_scaffold_3045_13
Nitrosomonas sp. AL212, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(7446..7931)
DNA (486bp) protein (162aa)
pilus biogenesis protein TapA id=12496623 bin=THIO_MID species=Methylobacter sp. UW 659-2-H10 genus=Methylobacter taxon_order=Methylococcales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
pilus biogenesis protein TapA
Pilus biogenesis protein TapA, putative {ECO:0000313|EMBL:ADZ27018.1}; TaxID=153948 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas sp. AL212.;"
SCNpilot_expt_500_p_scaffold_3045_14
CG_Beta_01, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8280..8723
DNA (444bp) protein (148aa)
Uncharacterized protein n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NQC6_9DELT
hypothetical protein
Tax=CG_Beta_01
SCNpilot_expt_500_p_scaffold_3045_15
Aromatoleum aromaticum, Aromatoleum, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8720..8938
DNA (219bp) protein (73aa)
Uncharacterized protein n=1 Tax=Aromatoleum aromaticum (strain EbN1) RepID=Q5P5M5_AROAE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAI07387.1}; TaxID=76114 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Aromatoleum.;" source="Aromatoleum aromaticum (strain EbN1) (Azoarcus sp. (strain EbN1)).;"
SCNpilot_expt_500_p_scaffold_3045_16
Burkholderia sp. MSHR3999, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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9054..9326
DNA (273bp) protein (91aa)
prevent-host-death protein n=1 Tax=Burkholderia ubonensis RepID=UPI00016A674E
KY49.ctg7180000000025_quiver, whole genome shotgun sequence {ECO:0000313|EMBL:KIP12940.1}; TaxID=1542965 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. MSHR3999.;"
Plasmid stabilization system antitoxin protein
SCNpilot_expt_500_p_scaffold_3045_17
Collimonas fungivorans, Collimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9385..9657
DNA (273bp) protein (91aa)
Uncharacterized protein n=1 Tax=Collimonas fungivorans (strain Ter331) RepID=G0AFE9_COLFT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEK63957.1}; TaxID=1005048 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Collimonas.;" source="Collimonas fungivorans (strain Ter331).;"
Displaying 17 items

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