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SCNpilot_expt_500_p_scaffold_1210

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_1210_1
unknown

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1..75
DNA (75bp) protein (25aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_1210_2
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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242..784
DNA (543bp) protein (181aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI0003453BDC rbh
Acetyltransferase {ECO:0000313|EMBL:AHX12665.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
acetyltransferase, ribosomal protein N-acetylase
SCNpilot_expt_500_p_scaffold_1210_3
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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781..1287
DNA (507bp) protein (169aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W612_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL94903.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_1210_4
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1625..3439
DNA (1815bp) protein (605aa)
Transketolase domain-containing protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W613_9GAMM
Transketolase domain-containing protein {ECO:0000313|EMBL:EIL94904.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase component beta subunit
SCNpilot_expt_500_p_scaffold_1210_5
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3786..5492)
DNA (1707bp) protein (569aa)
Periplasmic/7TM domain sensor diguanylate cyclase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WM91_9GAMM rbh
Periplasmic/7TM domain sensor diguanylate cyclase {ECO:0000313|EMBL:EIM00583.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
diguanylate cyclase (GGDEF) domain-containing protein rbh
SCNpilot_expt_500_p_scaffold_1210_6
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5904..9392)
DNA (3489bp) protein (1163aa)
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Transcription-repair-coupling factor n=1 Tax=Rhodanobacter denitrificans RepID=I4WL90_9GAMM rbh
transcription-repair coupling factor Mfd rbh
SCNpilot_expt_500_p_scaffold_1210_7
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(9482..10084)
DNA (603bp) protein (201aa)
Sortase n=1 Tax=Rhodanobacter denitrificans RepID=I4WL91_9GAMM rbh
sortase-like acyltransferase rbh
Sortase-like acyltransferase {ECO:0000313|EMBL:AGG88431.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_p_scaffold_1210_8
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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10285..10686
DNA (402bp) protein (134aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4VVL0_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL91251.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_1210_9
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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10683..11084
DNA (402bp) protein (134aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W618_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL94909.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
lactoylglutathione lyase-like lyase
SCNpilot_expt_500_p_scaffold_1210_10
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(11209..11748)
DNA (540bp) protein (180aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W619_9GAMM rbh
hypothetical protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_500_p_scaffold_1210_11

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11944..12210
DNA (267bp) protein (89aa)
Protein containing DUF1778 n=1 Tax=mine drainage metagenome RepID=T1CX20_9ZZZZ
Protein containing DUF1778 {ECO:0000313|EMBL:EQD73794.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_1210_12
Pectobacterium carotovorum, Pectobacterium, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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12227..12703
DNA (477bp) protein (159aa)
GCN5-related N-acetyltransferase n=1 Tax=mine drainage metagenome RepID=T0ZBI1_9ZZZZ
GCN5 family acetyltransferase {ECO:0000313|EMBL:KFX12079.1}; TaxID=555 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Pectobacterium.;" source="Pectobacterium carotovorum subsp. carotovorum (Erwinia carotovora; subsp. carotovora).;"
N-acetyltransferase GCN5
SCNpilot_expt_500_p_scaffold_1210_13
unknown

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13244..14665
DNA (1422bp) protein (474aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_1210_14
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(14971..15870)
DNA (900bp) protein (300aa)
Cation diffusion facilitator family transporter n=1 Tax=Rhodanobacter denitrificans RepID=M4NCL5_9GAMM rbh
cation diffusion facilitator family transporter rbh
Cation diffusion facilitator family transporter {ECO:0000313|EMBL:AGG88435.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_p_scaffold_1210_15
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(16002..16517)
DNA (516bp) protein (172aa)
Starvation-inducible outer membrane lipoprotein n=1 Tax=Rhodanobacter denitrificans RepID=M4NL08_9GAMM
starvation-inducible outer membrane lipoprotein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_500_p_scaffold_1210_16
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16557..17471)
DNA (915bp) protein (305aa)
Ribosomal RNA large subunit methyltransferase J {ECO:0000256|HAMAP-Rule:MF_00934}; EC=2.1.1.266 {ECO:0000256|HAMAP-Rule:MF_00934};; 23S rRNA (adenine(2030)-N6)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00934}; 23S rRNA m6A2030 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00934}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Ribosomal RNA large subunit methyltransferase J n=1 Tax=Rhodanobacter denitrificans RepID=M4NEQ0_9GAMM rbh
protein involved in catabolism of external DNA rbh
SCNpilot_expt_500_p_scaffold_1210_17
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17635..17970
DNA (336bp) protein (112aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NFP1_9GAMM
hypothetical protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_500_p_scaffold_1210_18
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18118..18465
DNA (348bp) protein (116aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WL99_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG88439.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_p_scaffold_1210_19
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18569..20320
DNA (1752bp) protein (584aa)
Copper-resistance protein, CopA family protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WLA0_9GAMM rbh
Copper-resistance protein, CopA family {ECO:0000313|EMBL:AGG88440.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
copper-resistance protein, CopA family rbh
SCNpilot_expt_500_p_scaffold_1210_20
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20317..21042
DNA (726bp) protein (242aa)
Copper resistance B n=1 Tax=Rhodanobacter denitrificans RepID=I4WLA1_9GAMM
uncharacterized protein involved in copper resistance
Uncharacterized protein involved in copper resistance {ECO:0000313|EMBL:AGG88441.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Displaying 20 items

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