ggKbase home page

SCNpilot_expt_500_p_scaffold_1610

Search features with annotation key words

Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_1610_1
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..320)
DNA (318bp) protein (106aa)
Uncharacterized protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VXM5_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL91966.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
SCNpilot_expt_500_p_scaffold_1610_2
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(338..2821)
DNA (2484bp) protein (828aa)
Type IV secretion/conjugal transfer ATPase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VXM4_9GAMM rbh
Type IV secretion/conjugal transfer ATPase {ECO:0000313|EMBL:EIL91965.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
type IV secretion/conjugal transfer ATPase; K03199 type IV secretion system protein VirB4 rbh
SCNpilot_expt_500_p_scaffold_1610_3
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2875..3141)
DNA (267bp) protein (89aa)
Putative type IV secretion system transmembrane protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VXM3_9GAMM
Putative type IV secretion system transmembrane protein {ECO:0000313|EMBL:EIL91964.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
putative type IV secretion system transmembrane protein; K03198 type IV secretion system protein VirB3
SCNpilot_expt_500_p_scaffold_1610_4
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3176..3583)
DNA (408bp) protein (136aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034780F2
Putative type IV secretion system protein {ECO:0000313|EMBL:EIL91963.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
putative type IV secretion system protein; K03197 type IV secretion system protein VirB2
SCNpilot_expt_500_p_scaffold_1610_5
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3779..4741)
DNA (963bp) protein (321aa)
Putative type IV secretion system conjugal protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VXM1_9GAMM rbh
Putative type IV secretion system conjugal protein {ECO:0000313|EMBL:EIL91962.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
putative type IV secretion system conjugal protein; K03194 type IV secretion system protein VirB1
SCNpilot_expt_500_p_scaffold_1610_6
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4741..5772)
DNA (1032bp) protein (344aa)
VirB11 protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VXM0_9GAMM rbh
VirB11 protein {ECO:0000313|EMBL:EIL91961.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
virB11; ATPase provides energy for both assembly of type IV secretion complex and secretion of T-DNA complex (VirB11); K03196 type IV secretion system protein VirB11 rbh
SCNpilot_expt_500_p_scaffold_1610_7
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5801..6967)
DNA (1167bp) protein (389aa)
VirB10 protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VXL9_9GAMM rbh
VirB10 protein {ECO:0000313|EMBL:EIL91960.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
virB10; VirB10 protein; K03195 type IV secretion system protein VirB10 rbh
SCNpilot_expt_500_p_scaffold_1610_8
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6964..7731)
DNA (768bp) protein (256aa)
Type IV secretion system protein Virb9 n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VXL8_9GAMM rbh
Type IV secretion system protein Virb9 {ECO:0000313|EMBL:EIL91959.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
virB9; VirB9 protein; K03204 type IV secretion system protein VirB9 rbh
SCNpilot_expt_500_p_scaffold_1610_9
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7728..8585)
DNA (858bp) protein (286aa)
VirB8 protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VXL7_9GAMM rbh
VirB8 protein {ECO:0000313|EMBL:EIL91958.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
Inner membrane protein forms channel for type IV secretion of T-DNA complex (VirB8); K03203 type IV secretion system protein VirB8
SCNpilot_expt_500_p_scaffold_1610_10
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8629..9258)
DNA (630bp) protein (210aa)
Uncharacterized protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VXL6_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL91957.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_1610_11
Xanthomonas fragariae, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9943..11844
DNA (1902bp) protein (634aa)
Type IV secretion system protein VirD4 n=1 Tax=Xanthomonas fragariae LMG 25863 RepID=R0FKD8_9XANT rbh
Type IV secretion system protein VirD4 {ECO:0000313|EMBL:ENZ93834.1}; TaxID=1131451 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas fragariae LMG 25863.;"
putative NTPase VagA; K03205 type IV secretion system protein VirD4 rbh
SCNpilot_expt_500_p_scaffold_1610_12
unknown

Not on your lists

11862..12080
DNA (219bp) protein (73aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_1610_13
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12541..13698)
DNA (1158bp) protein (386aa)
Ribonuclease D n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W064_9GAMM
Ribonuclease D {ECO:0000313|EMBL:EIL92855.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
ribonuclease D
SCNpilot_expt_500_p_scaffold_1610_14
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13948..15948
DNA (2001bp) protein (667aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NF66_9GAMM rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AGG89505.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_p_scaffold_1610_15
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15968..16549)
DNA (582bp) protein (194aa)
Putative cysteine dioxygenase type I n=1 Tax=Rhodanobacter denitrificans RepID=I4WWJ7_9GAMM rbh
putative metal-dependent enzyme of the double-stranded beta helix superfamily rbh
Putative metal-dependent enzyme of the double-stranded beta helix superfamily {ECO:0000313|EMBL:AGG89498.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_p_scaffold_1610_16
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16583..16900)
DNA (318bp) protein (106aa)
homoserine O-acetyltransferase (EC:2.3.1.31)
Homoserine O-acetyltransferase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W061_9GAMM
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
Displaying 16 items

View Taxonomy