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SCNpilot_expt_500_p_scaffold_1656

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_1656_1
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2..445)
DNA (444bp) protein (148aa)
General secretory pathway protein N n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VMQ5_9GAMM
General secretory pathway protein N {ECO:0000313|EMBL:EIL88496.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
hypothetical protein; K02463 general secretion pathway protein N
SCNpilot_expt_500_p_scaffold_1656_2
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(442..930)
DNA (489bp) protein (163aa)
General secretion pathway M protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VMQ6_9GAMM
General secretion pathway M protein {ECO:0000313|EMBL:EIL88497.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
SCNpilot_expt_500_p_scaffold_1656_3
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(927..2138)
DNA (1212bp) protein (404aa)
Type II secretion system protein L n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VMQ7_9GAMM rbh
General secretion pathway L {ECO:0000313|EMBL:EIL88498.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
general secretion pathway L; K02461 general secretion pathway protein L rbh
SCNpilot_expt_500_p_scaffold_1656_4
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2135..3055)
DNA (921bp) protein (307aa)
Type II secretion system protein K n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VMQ8_9GAMM rbh
Type II secretion system protein K {ECO:0000256|PIRNR:PIRNR002786}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
general secretion pathway protein K; K02460 general secretion pathway protein K rbh
SCNpilot_expt_500_p_scaffold_1656_5
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3052..3651)
DNA (600bp) protein (200aa)
General secretion pathway protein J n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VMQ9_9GAMM
General secretion pathway protein J {ECO:0000313|EMBL:EIL88500.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
general secretion pathway protein J; K02459 general secretion pathway protein J
SCNpilot_expt_500_p_scaffold_1656_6
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3648..4043)
DNA (396bp) protein (132aa)
General secretion pathway protein I n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VMR0_9GAMM
General secretion pathway protein I {ECO:0000313|EMBL:EIL88501.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
general secretion pathway protein I; K02458 general secretion pathway protein I
SCNpilot_expt_500_p_scaffold_1656_7
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4021..4560)
DNA (540bp) protein (180aa)
General secretion pathway protein H n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VMR1_9GAMM
General secretion pathway protein H {ECO:0000313|EMBL:EIL88502.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
general secretion pathway protein H; K02457 general secretion pathway protein H
SCNpilot_expt_500_p_scaffold_1656_8
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4557..4991)
DNA (435bp) protein (145aa)
General secretion pathway protein G n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VMR2_9GAMM
General secretion pathway protein G {ECO:0000313|EMBL:EIL88503.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
general secretion pathway protein G; K02456 general secretion pathway protein G
SCNpilot_expt_500_p_scaffold_1656_9
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5486..7084
DNA (1599bp) protein (533aa)
Lipoprotein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VMR3_9GAMM rbh
Lipoprotein {ECO:0000313|EMBL:EIL88504.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
lipoprotein rbh
SCNpilot_expt_500_p_scaffold_1656_10
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7352..8080)
DNA (729bp) protein (243aa)
RNA polymerase sigma factor n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VMR4_9GAMM
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
RNA polymerase sigma factor, sigma-70 family
SCNpilot_expt_500_p_scaffold_1656_11
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8339..8974
DNA (636bp) protein (212aa)
Cytochrome c biogenesis ATP-binding export protein CcmA {ECO:0000256|HAMAP-Rule:MF_01707}; EC=3.6.3.41 {ECO:0000256|HAMAP-Rule:MF_01707};; Heme exporter protein A {ECO:0000256|HAMAP-Rule:MF_01707}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Cytochrome c biogenesis protein CcmA n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WP89_9GAMM rbh
heme ABC exporter, ATP-binding protein CcmA rbh
SCNpilot_expt_500_p_scaffold_1656_12
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9056..9742
DNA (687bp) protein (229aa)
Heme exporter protein B n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WP88_9GAMM rbh
heme exporter protein CcmB rbh
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_500_p_scaffold_1656_13
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9739..10500
DNA (762bp) protein (254aa)
Heme exporter protein CcmC n=1 Tax=Rhodanobacter denitrificans RepID=I4WWI9_9GAMM rbh
heme exporter protein CcmC rbh
Heme exporter protein CcmC {ECO:0000313|EMBL:AGG89490.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_p_scaffold_1656_14
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10497..10733
DNA (237bp) protein (79aa)
Cytochrome C biogenesis protein CcmD n=1 Tax=Rhodanobacter denitrificans RepID=I4WWJ0_9GAMM
heme exporter protein CcmD
Heme exporter protein CcmD {ECO:0000313|EMBL:AGG89491.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_p_scaffold_1656_15
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10750..11208
DNA (459bp) protein (153aa)
Cytochrome c-type biogenesis protein CcmE n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W056_9GAMM
Cytochrome c-type biogenesis protein CcmE {ECO:0000256|HAMAP-Rule:MF_01959}; Cytochrome c maturation protein E {ECO:0000256|HAMAP-Rule:MF_01959}; Heme chaperone CcmE {ECO:0000256|HAMAP-Rule:MF_01959}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
cytochrome c-type biogenesis protein CcmE
SCNpilot_expt_500_p_scaffold_1656_16
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11334..13307
DNA (1974bp) protein (658aa)
C-type cytochrome biogenesis membrane protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VMS0_9GAMM rbh
C-type cytochrome biogenesis membrane protein {ECO:0000313|EMBL:EIL88511.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
c-type cytochrome biogenesis protein CcmF rbh
SCNpilot_expt_500_p_scaffold_1656_17
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13304..13846
DNA (543bp) protein (181aa)
Periplasmic protein thiol:disulfide oxidoreductase, DsbE subfamily n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W058_9GAMM rbh
Periplasmic protein thiol:disulfide oxidoreductase, DsbE subfamily {ECO:0000313|EMBL:EIL92849.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
periplasmic protein thiol:disulfide oxidoreductase, DsbE subfamily rbh
SCNpilot_expt_500_p_scaffold_1656_18
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13843..14328
DNA (486bp) protein (162aa)
C-type cytochromes biosynthesis protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WP40_9GAMM
C-type cytochromes biosynthesis protein {ECO:0000313|EMBL:EIM01232.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
uncharacterized protein involved in biosynthesis of c-type cytochromes
SCNpilot_expt_500_p_scaffold_1656_19
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14325..15377
DNA (1053bp) protein (351aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WP39_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIM01231.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein rbh
Displaying 19 items

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