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SCNpilot_expt_500_p_scaffold_1776

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_1776_1
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(33..296)
DNA (264bp) protein (88aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4W7V6_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL95547.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
DnaK suppressor protein
SCNpilot_expt_500_p_scaffold_1776_2
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(335..1099)
DNA (765bp) protein (255aa)
Diguanylate cyclase/phosphodiesterase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W4B0_9GAMM rbh
Diguanylate cyclase/phosphodiesterase {ECO:0000313|EMBL:EIL94301.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
diguanylate cyclase/phosphodiesterase (GGDEF EAL domains)
SCNpilot_expt_500_p_scaffold_1776_3
RIFOXYA1_FULL_Xanthomonadales_68_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1222..2991
DNA (1770bp) protein (590aa)
Acyl-CoA dehydrogenase n=1 Tax=Rhodanobacter denitrificans RepID=I4WWW4_9GAMM rbh
acyl-CoA dehydrogenase rbh
Tax=RIFOXYA1_FULL_Xanthomonadales_68_6_curated
SCNpilot_expt_500_p_scaffold_1776_4
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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3015..3428
DNA (414bp) protein (138aa)
OsmC-like protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WDA1_9GAMM
OsmC-like protein {ECO:0000313|EMBL:EIL97442.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
putative redox protein, regulator of disulfide bond formation
SCNpilot_expt_500_p_scaffold_1776_5
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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3632..4180
DNA (549bp) protein (183aa)
Cytochrome c oxidase subunit II n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WDA2_9GAMM rbh
Cytochrome c oxidase subunit II {ECO:0000313|EMBL:EIL97443.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
heme/copper-type cytochrome/quinol oxidase, subunit 2 rbh
SCNpilot_expt_500_p_scaffold_1776_6
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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4177..5664
DNA (1488bp) protein (496aa)
Heme/copper-type cytochrome/quinol oxidase, subunit 1 n=1 Tax=Rhodanobacter denitrificans RepID=M4NHL2_9GAMM rbh
heme/copper-type cytochrome/quinol oxidase, subunit 1 rbh
Heme/copper-type cytochrome/quinol oxidase, subunit 1 {ECO:0000313|EMBL:AGG89572.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_p_scaffold_1776_7
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5636..6253
DNA (618bp) protein (206aa)
Electron transport protein SCO1/SenC n=1 Tax=Rhodanobacter denitrificans RepID=I4WWW8_9GAMM rbh
uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems rbh
Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems {ECO:0000313|EMBL:AGG89573.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_p_scaffold_1776_8
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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6250..6825
DNA (576bp) protein (192aa)
Putative transmembrane protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WDA5_9GAMM rbh
Putative transmembrane protein {ECO:0000313|EMBL:EIL97446.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_1776_9
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6844..7020)
DNA (177bp) protein (59aa)
Uncharacterized protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4W0I1_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL92972.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
SCNpilot_expt_500_p_scaffold_1776_10
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7026..7265)
DNA (240bp) protein (80aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WEC9_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG89582.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_p_scaffold_1776_11
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(7642..9336)
DNA (1695bp) protein (565aa)
Putative uncharacterized protein n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IPZ4_KORVE rbh
Uncharacterized protein {ECO:0000313|EMBL:KGI76739.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
hypothetical protein; K07289 AsmA protein rbh
SCNpilot_expt_500_p_scaffold_1776_12
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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9456..10115
DNA (660bp) protein (220aa)
Glutathione S-transferase n=1 Tax=Rhodanobacter denitrificans RepID=M4NIT8_9GAMM rbh
glutathione S-transferase rbh
Glutathione S-transferase {ECO:0000313|EMBL:AGG89583.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_p_scaffold_1776_13
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10164..11543)
DNA (1380bp) protein (460aa)
D-alanine/D-serine/glycine permease n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WA66_9GAMM rbh
D-alanine/D-serine/glycine permease {ECO:0000313|EMBL:EIL96357.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
gamma-aminobutyrate permease-like transporter rbh
SCNpilot_expt_500_p_scaffold_1776_14
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11611..12213)
DNA (603bp) protein (201aa)
2',5' RNA ligase; K01975 2'-5' RNA ligase [EC:6.5.1.-]
2',5' RNA ligase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VTW3_9GAMM
2',5' RNA ligase {ECO:0000313|EMBL:EIL90654.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
SCNpilot_expt_500_p_scaffold_1776_15
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12278..12976)
DNA (699bp) protein (233aa)
Phosphoglycerate mutase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W3L5_9GAMM rbh
Phosphoglycerate mutase {ECO:0000313|EMBL:EIL94056.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
serine/threonine-protein phosphatase PGAM5, mitochondrial-like
SCNpilot_expt_500_p_scaffold_1776_16
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13075..14664)
DNA (1590bp) protein (530aa)
Amidohydrolase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W3N0_9GAMM rbh
Amidohydrolase {ECO:0000313|EMBL:EIL94071.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
amidohydrolase, imidazolonepropionase rbh
Displaying 16 items

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