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SCNpilot_expt_500_p_scaffold_1824

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_1824_1
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(330..896)
DNA (567bp) protein (189aa)
CRISPR-associated Csy4 family protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4VPH5_9GAMM
CRISPR-associated Csy4 family protein {ECO:0000313|EMBL:EIL89116.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
CRISPR-associated Csy4 family protein
SCNpilot_expt_500_p_scaffold_1824_2
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(901..1926)
DNA (1026bp) protein (342aa)
Crispr-associated protein, Csy3 family n=1 Tax=Rhodanobacter sp. 115 RepID=I4VPH4_9GAMM rbh
Crispr-associated protein, Csy3 family {ECO:0000313|EMBL:EIL89115.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
CRISPR-associated protein Csy3 family rbh
SCNpilot_expt_500_p_scaffold_1824_3
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1946..2953)
DNA (1008bp) protein (336aa)
CRISPR-associated protein Csy2 family n=1 Tax=Rhodanobacter sp. 115 RepID=I4VPH3_9GAMM
CRISPR-associated protein Csy2 family {ECO:0000313|EMBL:EIL89114.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
csy; crispr-associated protein, Csy2 family rbh
SCNpilot_expt_500_p_scaffold_1824_4
Xanthomonas campestris, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2950..4323)
DNA (1374bp) protein (458aa)
Crispr-associated protein, Csy1 family n=1 Tax=Xanthomonas campestris pv. raphani 756C RepID=G0CL57_XANCA rbh
csy; crispr-associated protein, Csy1 family rbh
Crispr-associated protein, Csy1 family {ECO:0000313|EMBL:AEL09136.1}; TaxID=990315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas campestris pv. raphani 756C.;"
SCNpilot_expt_500_p_scaffold_1824_5

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4466..4720
DNA (255bp) protein (85aa)
Plasmid stability protein n=2 Tax=mine drainage metagenome RepID=T1AFA1_9ZZZZ
Plasmid stability protein {ECO:0000313|EMBL:EQD59166.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
plasmid stability protein
SCNpilot_expt_500_p_scaffold_1824_6
Delftia tsuruhatensis, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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4717..5133
DNA (417bp) protein (139aa)
Ribonuclease VapC {ECO:0000256|HAMAP-Rule:MF_00265}; Short=RNase VapC {ECO:0000256|HAMAP-Rule:MF_00265};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00265};; Toxin VapC {ECO:0000256|HAMAP-Rule:MF_00265}; TaxID=180282 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia tsuruhatensis.;"
Ribonuclease VapC n=1 Tax=Delftia acidovorans CCUG 15835 RepID=S2WKD3_DELAC
PilT domain-containing protein; K07062
SCNpilot_expt_500_p_scaffold_1824_7
Xanthomonas fragariae, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5140..8565)
DNA (3426bp) protein (1142aa)
CRISPR-associated helicase Cas3 family n=1 Tax=Xanthomonas fragariae LMG 25863 RepID=R0FIJ2_9XANT rbh
CRISPR-associated helicase Cas3 family {ECO:0000313|EMBL:ENZ96953.1}; TaxID=1131451 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas fragariae LMG 25863.;"
crispr-associated helicase Cas3; K07012 rbh
SCNpilot_expt_500_p_scaffold_1824_8
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(8562..9557)
DNA (996bp) protein (332aa)
CRISPR-associated endonuclease Cas1 {ECO:0000256|HAMAP-Rule:MF_01470}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01470};; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
CRISPR-associated endonuclease Cas1 n=1 Tax=Rhodanobacter sp. 115 RepID=I4VPG8_9GAMM rbh
cas; crispr-associated protein Cas1; K15342 CRISP-associated protein Cas1
SCNpilot_expt_500_p_scaffold_1824_9
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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9780..10064
DNA (285bp) protein (95aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W2P3_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL93734.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
LysM domain-containing protein
SCNpilot_expt_500_p_scaffold_1824_10
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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10322..10852
DNA (531bp) protein (177aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W2P4_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL93735.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_1824_11
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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11088..13313
DNA (2226bp) protein (742aa)
Isocitrate dehydrogenase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W2P6_9GAMM rbh
isocitrate dehydrogenase, NADP-dependent, monomeric type rbh
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_500_p_scaffold_1824_12
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(13332..14276)
DNA (945bp) protein (315aa)
Putative oxidoreductase, aryl-alcohol dehydrogenase like protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VPI3_9GAMM rbh
Putative oxidoreductase, aryl-alcohol dehydrogenase like protein {ECO:0000313|EMBL:EIL89124.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
putative oxidoreductase, aryl-alcohol dehydrogenase like protein
SCNpilot_expt_500_p_scaffold_1824_13
unknown

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comp(14379..14450)
DNA (72bp) protein (24aa)

This feature has no annotations

Displaying 13 items

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