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SCNpilot_expt_500_p_scaffold_1835

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_1835_1
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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3..653
DNA (651bp) protein (217aa)
Poly(A) polymerase I {ECO:0000256|HAMAP-Rule:MF_00957}; Short=PAP I {ECO:0000256|HAMAP-Rule:MF_00957};; EC=2.7.7.19 {ECO:0000256|HAMAP-Rule:MF_00957};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Poly(A) polymerase I n=1 Tax=Rhodanobacter denitrificans RepID=I4WYD0_9GAMM
poly(A) polymerase
SCNpilot_expt_500_p_scaffold_1835_2
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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650..1135
DNA (486bp) protein (162aa)
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase n=1 Tax=Rhodanobacter denitrificans RepID=I4WYD1_9GAMM
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase {ECO:0000313|EMBL:AGG89678.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_p_scaffold_1835_3
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1168..1998
DNA (831bp) protein (277aa)
ketopantoate hydroxymethyltransferase (EC:2.1.2.11) rbh
3-methyl-2-oxobutanoate hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00156, ECO:0000256|SAAS:SAAS00094725}; EC=2.1.2.11 {ECO:0000256|HAMAP-Rule:MF_00156, ECO:0000256|SAAS:SAAS00094725};; Ketopantoate hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00156}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
3-methyl-2-oxobutanoate hydroxymethyltransferase n=1 Tax=Rhodanobacter denitrificans RepID=M4NHU9_9GAMM rbh
SCNpilot_expt_500_p_scaffold_1835_4
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2016..2861
DNA (846bp) protein (282aa)
pantothenate synthetase (EC:6.3.2.1) rbh
Pantothenate synthetase {ECO:0000256|HAMAP-Rule:MF_00158, ECO:0000256|SAAS:SAAS00247609}; Short=PS {ECO:0000256|HAMAP-Rule:MF_00158};; EC=6.3.2.1 {ECO:0000256|HAMAP-Rule:MF_00158, ECO:0000256|SAAS:SAAS00247611};; Pantoate--beta-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00158, ECO:0000256|SAAS:SAAS00247610}; Pantoate-activating enzyme {ECO:0000256|HAMAP-Rule:MF_00158}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacte
Pantothenate synthetase n=1 Tax=Rhodanobacter denitrificans RepID=M4NPX0_9GAMM rbh
SCNpilot_expt_500_p_scaffold_1835_5
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2893..3351
DNA (459bp) protein (153aa)
L-aspartate 1-decarboxylase (EC:4.1.1.11)
Aspartate 1-decarboxylase {ECO:0000256|HAMAP-Rule:MF_00446, ECO:0000256|SAAS:SAAS00097809}; EC=4.1.1.11 {ECO:0000256|HAMAP-Rule:MF_00446, ECO:0000256|SAAS:SAAS00097718};; Aspartate alpha-decarboxylase {ECO:0000256|HAMAP-Rule:MF_00446}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Aspartate 1-decarboxylase n=1 Tax=Rhodanobacter denitrificans RepID=I4WYD4_9GAMM
SCNpilot_expt_500_p_scaffold_1835_6
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3403..4497)
DNA (1095bp) protein (365aa)
Epoxyqueuosine reductase {ECO:0000256|HAMAP-Rule:MF_00916}; EC=1.17.99.6 {ECO:0000256|HAMAP-Rule:MF_00916};; Queuosine biosynthesis protein QueG {ECO:0000256|HAMAP-Rule:MF_00916}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Epoxyqueuosine reductase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WB15_9GAMM rbh
iron-sulfur cluster binding protein, putative
SCNpilot_expt_500_p_scaffold_1835_7
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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4527..6017
DNA (1491bp) protein (497aa)
YjeF-like protein, hydroxyethylthiazole kinase-related protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WYD6_9GAMM rbh
yjeF-like protein, hydroxyethylthiazole kinase-related protein rbh
YjeF-like protein, hydroxyethylthiazole kinase-related protein {ECO:0000313|EMBL:AGG89673.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_p_scaffold_1835_8
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6014..6487
DNA (474bp) protein (158aa)
ATPase, YjeE family n=1 Tax=Rhodanobacter denitrificans RepID=M4NHU4_9GAMM
ATPase, YjeE family
ATPase, YjeE family {ECO:0000313|EMBL:AGG89672.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_p_scaffold_1835_9
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6668..8128
DNA (1461bp) protein (487aa)
N-acetylmuramoyl-L-alanine amidase n=1 Tax=Rhodanobacter denitrificans RepID=I4WYD8_9GAMM rbh
N-acetylmuramoyl-L-alanine amidase rbh
N-acetylmuramoyl-L-alanine amidase {ECO:0000313|EMBL:AGG89671.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_p_scaffold_1835_10
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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8164..9957
DNA (1794bp) protein (598aa)
DNA mismatch repair protein MutL n=1 Tax=Rhodanobacter sp. 115 RepID=I4WAN8_9GAMM
DNA mismatch repair protein MutL {ECO:0000256|HAMAP-Rule:MF_00149, ECO:0000256|SAAS:SAAS00058680}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
DNA mismatch repair protein MutL
SCNpilot_expt_500_p_scaffold_1835_11
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10094..11023
DNA (930bp) protein (310aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4WAN9_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL96530.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_1835_12
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(11044..11826)
DNA (783bp) protein (261aa)
3-hydroxybutyryl-CoA dehydratase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W412_9GAMM
3-hydroxybutyryl-CoA dehydratase {ECO:0000313|EMBL:EIL94203.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
enoyl-CoA hydratase/carnithine racemase
SCNpilot_expt_500_p_scaffold_1835_13
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11880..12704
DNA (825bp) protein (275aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU003915}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU003915};; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Peptidyl-prolyl cis-trans isomerase n=1 Tax=Rhodanobacter denitrificans RepID=M4NHT9_9GAMM rbh
FKBP-type peptidyl-prolyl cis-trans isomerase rbh
SCNpilot_expt_500_p_scaffold_1835_14
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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12925..13518
DNA (594bp) protein (198aa)
NTP pyrophosphohydrolase n=1 Tax=Rhodanobacter denitrificans RepID=I4WPR0_9GAMM
NTP pyrophosphohydrolase
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_500_p_scaffold_1835_15
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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13515..14363
DNA (849bp) protein (283aa)
Rhodanese-related sulfurtransferase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VPE4_9GAMM rbh
Rhodanese-related sulfurtransferase {ECO:0000313|EMBL:EIL89085.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
rhodanese-related sulfurtransferase
Displaying 15 items

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