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SCNpilot_expt_500_p_scaffold_1857

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_1857_1
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(109..1437)
DNA (1329bp) protein (443aa)
ATP-dependent RNA helicase n=1 Tax=Rhodanobacter denitrificans RepID=I4WTI4_9GAMM rbh
DNA/RNA helicase, superfamily II rbh
DNA/RNA helicase, superfamily II {ECO:0000313|EMBL:AGG88313.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_p_scaffold_1857_2
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1583..2239)
DNA (657bp) protein (219aa)
2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1, 4-benzoquinol methylase n=1 Tax=Rhodanobacter denitrificans RepID=I4WTI5_9GAMM rbh
2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase rbh
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_500_p_scaffold_1857_3
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2369..3601
DNA (1233bp) protein (411aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI000348B10F rbh
Sugar transporter {ECO:0000313|EMBL:KGI77557.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
arabinose efflux permease family protein
SCNpilot_expt_500_p_scaffold_1857_4
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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3639..4124
DNA (486bp) protein (162aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU003915}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU003915};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Peptidyl-prolyl cis-trans isomerase n=1 Tax=Rhodanobacter denitrificans RepID=I4WTI7_9GAMM
FKBP-type peptidyl-prolyl cis-trans isomerase
SCNpilot_expt_500_p_scaffold_1857_5
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4374..4949)
DNA (576bp) protein (192aa)
Cell wall-associated hydrolase, invasion-associated protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NEF0_9GAMM rbh
cell wall-associated hydrolase, invasion-associated protein rbh
Cell wall-associated hydrolase, invasion-associated protein {ECO:0000313|EMBL:AGG88317.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_p_scaffold_1857_6
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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5071..6330
DNA (1260bp) protein (420aa)
dadA; D-amino acid dehydrogenase subunit; K00285 D-amino-acid dehydrogenase [EC:1.4.99.1]
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI00030988B8
Amino acid dehydrogenase {ECO:0000313|EMBL:AHX12445.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
SCNpilot_expt_500_p_scaffold_1857_7
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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6382..7731
DNA (1350bp) protein (450aa)
FAD-dependent pyridine nucleotide-disulfide oxidoreductase; K00383 glutathione reductase (NADPH) [EC:1.8.1.7]
Glutathione-disulfide reductase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VNA6_9GAMM rbh
Glutathione-disulfide reductase {ECO:0000313|EMBL:EIL88697.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
SCNpilot_expt_500_p_scaffold_1857_8
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7828..8607
DNA (780bp) protein (260aa)
N-formylglutamate amidohydrolase n=1 Tax=Rhodanobacter denitrificans RepID=M4NEF6_9GAMM rbh
N-formylglutamate amidohydrolase rbh
N-formylglutamate amidohydrolase {ECO:0000313|EMBL:AGG88322.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_p_scaffold_1857_9
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8795..9037
DNA (243bp) protein (81aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0002DE1EE4
Uncharacterized protein {ECO:0000313|EMBL:AIF47457.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
SCNpilot_expt_500_p_scaffold_1857_10
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9083..9523)
DNA (441bp) protein (147aa)
Putative translation initiation inhibitor, yjgF family n=1 Tax=Rhodanobacter denitrificans RepID=M4NFD6_9GAMM
putative translation initiation inhibitor, yjgF family
Putative translation initiation inhibitor, yjgF family {ECO:0000313|EMBL:AGG88323.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_p_scaffold_1857_11
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9520..10185)
DNA (666bp) protein (222aa)
Carbonic anhydrase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5R3_9GAMM rbh
carbonic anhydrase rbh
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_500_p_scaffold_1857_12
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10223..11710)
DNA (1488bp) protein (496aa)
2-aminomuconic semialdehyde dehydrogenase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WQA6_9GAMM rbh
NAD-dependent aldehyde dehydrogenase rbh
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_500_p_scaffold_1857_13
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11815..12603)
DNA (789bp) protein (263aa)
3-oxoacyl-ACP reductase; K00059 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
Short-chain dehydrogenase/reductase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VNA1_9GAMM rbh
Short-chain dehydrogenase/reductase {ECO:0000313|EMBL:EIL88692.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
SCNpilot_expt_500_p_scaffold_1857_14
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12626..12937)
DNA (312bp) protein (104aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WQA8_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIM01650.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_1857_15
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12934..13734)
DNA (801bp) protein (267aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WQA9_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIM01651.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Maltose operon periplasmic protein precursor (MalM) rbh
SCNpilot_expt_500_p_scaffold_1857_16
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13740..14243)
DNA (504bp) protein (168aa)
Asparagine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00534, ECO:0000256|SAAS:SAAS00089453}; EC=6.1.1.22 {ECO:0000256|HAMAP-Rule:MF_00534, ECO:0000256|SAAS:SAAS00089453};; Asparaginyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00534}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
asparaginyl-tRNA synthetase (EC:6.1.1.22)
Asparagine--tRNA ligase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5R8_9GAMM
Displaying 16 items

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