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SCNpilot_expt_500_p_scaffold_8426

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Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_8426_1
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3..521)
DNA (519bp) protein (173aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI00031A2310
Flagellar motor protein MotA {ECO:0000313|EMBL:AHX12342.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
flagellar motor protein MotA; K02556 chemotaxis protein MotA
SCNpilot_expt_500_p_scaffold_8426_2
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(685..1647)
DNA (963bp) protein (321aa)
Protein-export membrane protein SecF n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VNA9_9GAMM rbh
Protein-export membrane protein SecF {ECO:0000256|HAMAP-Rule:MF_01464}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
protein translocase subunit secF rbh
SCNpilot_expt_500_p_scaffold_8426_3
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1768..2907)
DNA (1140bp) protein (380aa)
Protein translocase subunit SecD n=1 Tax=Rhodanobacter denitrificans RepID=I4WNS5_9GAMM
protein-export membrane protein, SecD/SecF family
Protein translocase subunit SecD {ECO:0000256|HAMAP-Rule:MF_01463}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_p_scaffold_8426_4
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2892..3647)
DNA (756bp) protein (252aa)
Protein translocase subunit SecD n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WEF5_9GAMM
protein-export membrane protein, SecD/SecF family
Protein translocase subunit SecD {ECO:0000256|HAMAP-Rule:MF_01463}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_p_scaffold_8426_5
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3806..4132)
DNA (327bp) protein (109aa)
Preprotein translocase subunit YajC n=1 Tax=Rhodanobacter denitrificans RepID=I4WNS4_9GAMM
preprotein translocase, YajC subunit
Preprotein translocase, YajC subunit {ECO:0000313|EMBL:AGG88223.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_p_scaffold_8426_6
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4333..5496)
DNA (1164bp) protein (388aa)
tRNA-guanine transglycosylase (EC:2.4.2.29) rbh
Queuine tRNA-ribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777}; EC=2.4.2.29 {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777};; Guanine insertion enzyme {ECO:0000256|HAMAP-Rule:MF_00168}; tRNA-guanine transglycosylase {ECO:0000256|HAMAP-Rule:MF_00168}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Queuine tRNA-ribosyltransferase n=1 Tax=Rhodanobacter denitrificans RepID=M4NE69_9GAMM rbh
SCNpilot_expt_500_p_scaffold_8426_7
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5556..6602)
DNA (1047bp) protein (349aa)
S-adenosylmethionine:tRNA ribosyltransferase-isomerase {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094456}; EC=2.4.99.17 {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094434};; Queuosine biosynthesis protein QueA {ECO:0000256|HAMAP-Rule:MF_00113}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
S-adenosylmethionine:tRNA ribosyltransferase-isomerase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5F0_9GAMM rbh
S-adenosylmethionine:tRNA ribosyltransferase-isomerase rbh
SCNpilot_expt_500_p_scaffold_8426_8
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6657..7262)
DNA (606bp) protein (202aa)
Two-component system response regulator, LuxR family protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4WGA9_9GAMM rbh
Two-component system response regulator, LuxR family protein {ECO:0000313|EMBL:EIL98500.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain
SCNpilot_expt_500_p_scaffold_8426_9
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(7326..7883)
DNA (558bp) protein (186aa)
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5E6_9GAMM
Integral membrane sensor signal transduction histidine kinase {ECO:0000313|EMBL:EIL94687.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
signal transduction histidine kinase
Displaying 9 items

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